Cargando…

Species-Specific Relationships between DNA and Chromatin Properties of CpG Islands in Embryonic Stem Cells and Differentiated Cells

CpG islands often exhibit low DNA methylation, high histone H3 lysine 4 trimethylation, low nucleosome density, and high DNase I hypersensitivity, yet the rules by which CpG islands are sensed remain poorly understood. In this study, we first evaluated the relationships between the DNA and the chrom...

Descripción completa

Detalles Bibliográficos
Autores principales:	Langerman, Justin, Lopez, David, Pellegrini, Matteo, Smale, Stephen T.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8072027/ https://www.ncbi.nlm.nih.gov/pubmed/33770494 http://dx.doi.org/10.1016/j.stemcr.2021.02.016

Ejemplares similares

Preservation of methylated CpG dinucleotides in human CpG islands
por: Panchin, Alexander Y., et al.
Publicado: (2016)

CpG island-mediated global gene regulatory modes in mouse embryonic stem cells
por: Beck, Samuel, et al.
Publicado: (2014)

Contrasting chromatin organization of CpG islands and exons in the human genome
por: Choi, Jung Kyoon
Publicado: (2010)

Factors to preserve CpG-rich sequences in methylated CpG islands
por: Miyahara, Hiroki, et al.
Publicado: (2015)

Synthetic CpG islands reveal DNA sequence determinants of chromatin structure
por: Wachter, Elisabeth, et al.
Publicado: (2014)

Bidding the CpG island goodbye
por: Greally, John M
Publicado: (2013)

CpG binding protein (CFP1) occupies open chromatin regions of active genes, including enhancers and non-CpG islands
por: van de Lagemaat, Louie N., et al.
Publicado: (2018)

CpGIF: an algorithm for the identification of CpG islands
por: Sujuan, Ye, et al.
Publicado: (2008)

Novel Human Embryonic Stem Cell Regulators Identified by Conserved and Distinct CpG Island Methylation State
por: Pells, Steve, et al.
Publicado: (2015)

A Panel of CpG Methylation Sites Distinguishes Human Embryonic Stem Cells and Induced Pluripotent Stem Cells
por: Huang, Kevin, et al.
Publicado: (2013)

Prediction of CpG-island function: CpG clustering vs. sliding-window methods
por: Hackenberg, Michael, et al.
Publicado: (2010)

CpG Methylation Altered the Stability and Structure of the i-Motifs Located in the CpG Islands
por: Oshikawa, Daiki, et al.
Publicado: (2022)

ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection
por: Long, Hannah K., et al.
Publicado: (2013)

CpG Island Mapping by Epigenome Prediction
por: Bock, Christoph, et al.
Publicado: (2007)

Orphan CpG islands as alternative promoters
por: Sarda, Shrutii, et al.
Publicado: (2017)

HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells
por: Deng, Tao, et al.
Publicado: (2013)

CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells
por: Mantsoki, Anna, et al.
Publicado: (2015)

CpGPAP: CpG island predictor analysis platform
por: Chuang, Li-Yeh, et al.
Publicado: (2012)

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale
por: Barrera, Víctor, et al.
Publicado: (2012)

Engineering CpG island DNA methylation in pluripotent cells through synthetic CpG-free ssDNA insertion
por: Tompkins, Joshua, et al.
Publicado: (2023)

Deoxyribonucleic acid methylation profiling of single human blastocysts by methylated CpG-island amplification coupled with CpG-island microarray
por: Huntriss, John, et al.
Publicado: (2015)

CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
por: Han, Leng, et al.
Publicado: (2009)

In silico identification of single nucleotide variations at CpG sites regulating CpG island existence and size
por: Shyamala, Nivas, et al.
Publicado: (2022)

Corrigendum: CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells
por: Mantsoki, Anna, et al.
Publicado: (2016)

CpG Islands: Starting Blocks for Replication and Transcription
por: Prioleau, Marie-Noëlle
Publicado: (2009)

CpG island hypermethylation go circular (RNA)
por: Dragomir, Mihnea P., et al.
Publicado: (2018)

Intragenic CpG Islands and Their Impact on Gene Regulation
por: Cain, James A., et al.
Publicado: (2022)

Sequence determinants, function, and evolution of CpG islands
por: Angeloni, Allegra, et al.
Publicado: (2021)

CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome
por: Heisler, Lawrence E., et al.
Publicado: (2005)

Human genes with CpG island promoters have a distinct transcription-associated chromatin organization
por: Vavouri, Tanya, et al.
Publicado: (2012)

Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin
por: Bina, Minou, et al.
Publicado: (2013)

Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice
por: Boukas, Leandros, et al.
Publicado: (2023)

Single-CpG-resolution methylome analysis identifies clinicopathologically aggressive CpG island methylator phenotype clear cell renal cell carcinomas
por: Arai, Eri, et al.
Publicado: (2012)

Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
por: Grandi, Fiorella C., et al.
Publicado: (2015)

Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse
por: Auclair, Ghislain, et al.
Publicado: (2014)

Polycomb-Like 3 Promotes Polycomb Repressive Complex 2 Binding to CpG Islands and Embryonic Stem Cell Self-Renewal
por: Hunkapiller, Julie, et al.
Publicado: (2012)

Regulation of DNA transposition by CpG methylation and chromatin structure in human cells
por: Jursch, Tobias, et al.
Publicado: (2013)

CpGcluster: a distance-based algorithm for CpG-island detection
por: Hackenberg, Michael, et al.
Publicado: (2006)

Comparative Analysis of CpG Islands in Four Fish Genomes
por: Han, Leng, et al.
Publicado: (2008)

Long-Range Autocorrelations of CpG Islands in the Human Genome
por: Koester, Benjamin, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_ouudie0lnorm2ileivfatqqu55