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Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies

Whole Exome Sequencing (WES) is a powerful approach for detecting sequence variations in the human genome. The aim of this study was to investigate the genetic defects in Jordanian patients with inherited retinal dystrophies (IRDs) using WES. WES was performed on proband patients’ DNA samples from 5...

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Autores principales: Azab, Bilal, Dardas, Zain, Aburizeg, Dunia, Al-Bdour, Muawyah, Abu-Ameerh, Mohammed, Saleh, Tareq, Barham, Raghda, Maswadi, Ranad, Ababneh, Nidaa A, Alsalem, Mohammad, Zouk, Hana, Amr, Sami, Awidi, Abdalla
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074154/
https://www.ncbi.nlm.nih.gov/pubmed/33921607
http://dx.doi.org/10.3390/genes12040593
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author Azab, Bilal
Dardas, Zain
Aburizeg, Dunia
Al-Bdour, Muawyah
Abu-Ameerh, Mohammed
Saleh, Tareq
Barham, Raghda
Maswadi, Ranad
Ababneh, Nidaa A
Alsalem, Mohammad
Zouk, Hana
Amr, Sami
Awidi, Abdalla
author_facet Azab, Bilal
Dardas, Zain
Aburizeg, Dunia
Al-Bdour, Muawyah
Abu-Ameerh, Mohammed
Saleh, Tareq
Barham, Raghda
Maswadi, Ranad
Ababneh, Nidaa A
Alsalem, Mohammad
Zouk, Hana
Amr, Sami
Awidi, Abdalla
author_sort Azab, Bilal
collection PubMed
description Whole Exome Sequencing (WES) is a powerful approach for detecting sequence variations in the human genome. The aim of this study was to investigate the genetic defects in Jordanian patients with inherited retinal dystrophies (IRDs) using WES. WES was performed on proband patients’ DNA samples from 55 Jordanian families. Sanger sequencing was used for validation and segregation analysis of the detected, potential disease-causing variants (DCVs). Thirty-five putatively causative variants (6 novel and 29 known) in 21 IRD-associated genes were identified in 71% of probands (39 of the 55 families). Three families showed phenotypes different from the typically reported clinical findings associated with the causative genes. To our knowledge, this is the largest genetic analysis of IRDs in the Jordanian population to date. Our study also confirms that WES is a powerful tool for the molecular diagnosis of IRDs in large patient cohorts.
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spelling pubmed-80741542021-04-27 Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies Azab, Bilal Dardas, Zain Aburizeg, Dunia Al-Bdour, Muawyah Abu-Ameerh, Mohammed Saleh, Tareq Barham, Raghda Maswadi, Ranad Ababneh, Nidaa A Alsalem, Mohammad Zouk, Hana Amr, Sami Awidi, Abdalla Genes (Basel) Article Whole Exome Sequencing (WES) is a powerful approach for detecting sequence variations in the human genome. The aim of this study was to investigate the genetic defects in Jordanian patients with inherited retinal dystrophies (IRDs) using WES. WES was performed on proband patients’ DNA samples from 55 Jordanian families. Sanger sequencing was used for validation and segregation analysis of the detected, potential disease-causing variants (DCVs). Thirty-five putatively causative variants (6 novel and 29 known) in 21 IRD-associated genes were identified in 71% of probands (39 of the 55 families). Three families showed phenotypes different from the typically reported clinical findings associated with the causative genes. To our knowledge, this is the largest genetic analysis of IRDs in the Jordanian population to date. Our study also confirms that WES is a powerful tool for the molecular diagnosis of IRDs in large patient cohorts. MDPI 2021-04-19 /pmc/articles/PMC8074154/ /pubmed/33921607 http://dx.doi.org/10.3390/genes12040593 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Azab, Bilal
Dardas, Zain
Aburizeg, Dunia
Al-Bdour, Muawyah
Abu-Ameerh, Mohammed
Saleh, Tareq
Barham, Raghda
Maswadi, Ranad
Ababneh, Nidaa A
Alsalem, Mohammad
Zouk, Hana
Amr, Sami
Awidi, Abdalla
Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title_full Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title_fullStr Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title_full_unstemmed Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title_short Unique Variant Spectrum in a Jordanian Cohort with Inherited Retinal Dystrophies
title_sort unique variant spectrum in a jordanian cohort with inherited retinal dystrophies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074154/
https://www.ncbi.nlm.nih.gov/pubmed/33921607
http://dx.doi.org/10.3390/genes12040593
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