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Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold
Network analysis provides a rich framework to model complex phenomena, such as human brain connectivity. It has proven efficient to understand their natural properties and design predictive models. In this paper, we study the variability within groups of networks, i.e., the structure of connection s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074266/ https://www.ncbi.nlm.nih.gov/pubmed/33924060 http://dx.doi.org/10.3390/e23040490 |
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author | Mantoux, Clément Couvy-Duchesne, Baptiste Cacciamani, Federica Epelbaum, Stéphane Durrleman, Stanley Allassonnière, Stéphanie |
author_facet | Mantoux, Clément Couvy-Duchesne, Baptiste Cacciamani, Federica Epelbaum, Stéphane Durrleman, Stanley Allassonnière, Stéphanie |
author_sort | Mantoux, Clément |
collection | PubMed |
description | Network analysis provides a rich framework to model complex phenomena, such as human brain connectivity. It has proven efficient to understand their natural properties and design predictive models. In this paper, we study the variability within groups of networks, i.e., the structure of connection similarities and differences across a set of networks. We propose a statistical framework to model these variations based on manifold-valued latent factors. Each network adjacency matrix is decomposed as a weighted sum of matrix patterns with rank one. Each pattern is described as a random perturbation of a dictionary element. As a hierarchical statistical model, it enables the analysis of heterogeneous populations of adjacency matrices using mixtures. Our framework can also be used to infer the weight of missing edges. We estimate the parameters of the model using an Expectation-Maximization-based algorithm. Experimenting on synthetic data, we show that the algorithm is able to accurately estimate the latent structure in both low and high dimensions. We apply our model on a large data set of functional brain connectivity matrices from the UK Biobank. Our results suggest that the proposed model accurately describes the complex variability in the data set with a small number of degrees of freedom. |
format | Online Article Text |
id | pubmed-8074266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-80742662021-04-27 Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold Mantoux, Clément Couvy-Duchesne, Baptiste Cacciamani, Federica Epelbaum, Stéphane Durrleman, Stanley Allassonnière, Stéphanie Entropy (Basel) Article Network analysis provides a rich framework to model complex phenomena, such as human brain connectivity. It has proven efficient to understand their natural properties and design predictive models. In this paper, we study the variability within groups of networks, i.e., the structure of connection similarities and differences across a set of networks. We propose a statistical framework to model these variations based on manifold-valued latent factors. Each network adjacency matrix is decomposed as a weighted sum of matrix patterns with rank one. Each pattern is described as a random perturbation of a dictionary element. As a hierarchical statistical model, it enables the analysis of heterogeneous populations of adjacency matrices using mixtures. Our framework can also be used to infer the weight of missing edges. We estimate the parameters of the model using an Expectation-Maximization-based algorithm. Experimenting on synthetic data, we show that the algorithm is able to accurately estimate the latent structure in both low and high dimensions. We apply our model on a large data set of functional brain connectivity matrices from the UK Biobank. Our results suggest that the proposed model accurately describes the complex variability in the data set with a small number of degrees of freedom. MDPI 2021-04-20 /pmc/articles/PMC8074266/ /pubmed/33924060 http://dx.doi.org/10.3390/e23040490 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Mantoux, Clément Couvy-Duchesne, Baptiste Cacciamani, Federica Epelbaum, Stéphane Durrleman, Stanley Allassonnière, Stéphanie Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title | Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title_full | Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title_fullStr | Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title_full_unstemmed | Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title_short | Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold |
title_sort | understanding the variability in graph data sets through statistical modeling on the stiefel manifold |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074266/ https://www.ncbi.nlm.nih.gov/pubmed/33924060 http://dx.doi.org/10.3390/e23040490 |
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