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Draft genome of a biparental beetle species, Lethrus apterus

BACKGROUND: The lack of an understanding about the genomic architecture underpinning parental behaviour in subsocial insects displaying simple parental behaviours prevents the development of a full understanding about the evolutionary origin of sociality. Lethrus apterus is one of the few insect spe...

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Autores principales: Nagy, Nikoletta A., Rácz, Rita, Rimington, Oliver, Póliska, Szilárd, Orozco-terWengel, Pablo, Bruford, Michael W., Barta, Zoltán
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074431/
https://www.ncbi.nlm.nih.gov/pubmed/33902445
http://dx.doi.org/10.1186/s12864-021-07627-w
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author Nagy, Nikoletta A.
Rácz, Rita
Rimington, Oliver
Póliska, Szilárd
Orozco-terWengel, Pablo
Bruford, Michael W.
Barta, Zoltán
author_facet Nagy, Nikoletta A.
Rácz, Rita
Rimington, Oliver
Póliska, Szilárd
Orozco-terWengel, Pablo
Bruford, Michael W.
Barta, Zoltán
author_sort Nagy, Nikoletta A.
collection PubMed
description BACKGROUND: The lack of an understanding about the genomic architecture underpinning parental behaviour in subsocial insects displaying simple parental behaviours prevents the development of a full understanding about the evolutionary origin of sociality. Lethrus apterus is one of the few insect species that has biparental care. Division of labour can be observed between parents during the reproductive period in order to provide food and protection for their offspring. RESULTS: Here, we report the draft genome of L. apterus, the first genome in the family Geotrupidae. The final assembly consisted of 286.93 Mbp in 66,933 scaffolds. Completeness analysis found the assembly contained 93.5% of the Endopterygota core BUSCO gene set. Ab initio gene prediction resulted in 25,385 coding genes, whereas homology-based analyses predicted 22,551 protein coding genes. After merging, 20,734 were found during functional annotation. Compared to other publicly available beetle genomes, 23,528 genes among the predicted genes were assigned to orthogroups of which 1664 were in species-specific groups. Additionally, reproduction related genes were found among the predicted genes based on which a reduction in the number of odorant- and pheromone-binding proteins was detected. CONCLUSIONS: These genes can be used in further comparative and functional genomic researches which can advance our understanding of the genetic basis and hence the evolution of parental behaviour. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07627-w.
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spelling pubmed-80744312021-04-26 Draft genome of a biparental beetle species, Lethrus apterus Nagy, Nikoletta A. Rácz, Rita Rimington, Oliver Póliska, Szilárd Orozco-terWengel, Pablo Bruford, Michael W. Barta, Zoltán BMC Genomics Research BACKGROUND: The lack of an understanding about the genomic architecture underpinning parental behaviour in subsocial insects displaying simple parental behaviours prevents the development of a full understanding about the evolutionary origin of sociality. Lethrus apterus is one of the few insect species that has biparental care. Division of labour can be observed between parents during the reproductive period in order to provide food and protection for their offspring. RESULTS: Here, we report the draft genome of L. apterus, the first genome in the family Geotrupidae. The final assembly consisted of 286.93 Mbp in 66,933 scaffolds. Completeness analysis found the assembly contained 93.5% of the Endopterygota core BUSCO gene set. Ab initio gene prediction resulted in 25,385 coding genes, whereas homology-based analyses predicted 22,551 protein coding genes. After merging, 20,734 were found during functional annotation. Compared to other publicly available beetle genomes, 23,528 genes among the predicted genes were assigned to orthogroups of which 1664 were in species-specific groups. Additionally, reproduction related genes were found among the predicted genes based on which a reduction in the number of odorant- and pheromone-binding proteins was detected. CONCLUSIONS: These genes can be used in further comparative and functional genomic researches which can advance our understanding of the genetic basis and hence the evolution of parental behaviour. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07627-w. BioMed Central 2021-04-26 /pmc/articles/PMC8074431/ /pubmed/33902445 http://dx.doi.org/10.1186/s12864-021-07627-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Nagy, Nikoletta A.
Rácz, Rita
Rimington, Oliver
Póliska, Szilárd
Orozco-terWengel, Pablo
Bruford, Michael W.
Barta, Zoltán
Draft genome of a biparental beetle species, Lethrus apterus
title Draft genome of a biparental beetle species, Lethrus apterus
title_full Draft genome of a biparental beetle species, Lethrus apterus
title_fullStr Draft genome of a biparental beetle species, Lethrus apterus
title_full_unstemmed Draft genome of a biparental beetle species, Lethrus apterus
title_short Draft genome of a biparental beetle species, Lethrus apterus
title_sort draft genome of a biparental beetle species, lethrus apterus
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8074431/
https://www.ncbi.nlm.nih.gov/pubmed/33902445
http://dx.doi.org/10.1186/s12864-021-07627-w
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