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Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling

Generalized auto-calibrating partially parallel acquisitions (GRAPPA) and other parallel Magnetic Resonance Imaging (pMRI) methods restore the unacquired data in k-space by linearly calculating the undersampled data around the missing points. In order to obtain the weight of the linear calculation,...

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Autores principales: Sheng, Jinhua, Shi, Yuchen, Zhang, Qiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076203/
https://www.ncbi.nlm.nih.gov/pubmed/33903702
http://dx.doi.org/10.1038/s41598-021-88567-z
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author Sheng, Jinhua
Shi, Yuchen
Zhang, Qiao
author_facet Sheng, Jinhua
Shi, Yuchen
Zhang, Qiao
author_sort Sheng, Jinhua
collection PubMed
description Generalized auto-calibrating partially parallel acquisitions (GRAPPA) and other parallel Magnetic Resonance Imaging (pMRI) methods restore the unacquired data in k-space by linearly calculating the undersampled data around the missing points. In order to obtain the weight of the linear calculation, a small number of auto-calibration signal (ACS) lines need to be sampled at the center of the k-space. Therefore, the sampling pattern used in this type of method is to full sample data in the middle area and undersample in the outer k-space with nominal reduction factors. In this paper, we propose a novel reconstruction method with a multiple variable density sampling (MVDS) that is different from traditional sampling patterns. Our method can significantly improve the image quality using multiple reduction factors with fewer ACS lines. Specifically, the traditional sampling pattern only uses a single reduction factor to uniformly undersample data in the region outside the ACS, but we use multiple reduction factors. When sampling the k-space data, we keep the ACS lines unchanged, use a smaller reduction factor for undersampling data near the ACS lines and a larger reduction factor for the outermost part of k-space. The error is lower after reconstruction of this region by undersampled data with a smaller reduction factor. The experimental results show that with the same amount of data sampled, using NL-GRAPPA to reconstruct the k-space data sampled by our method can result in lower noise and fewer artifacts than traditional methods. In particular, our method is extremely effective when the number of ACS lines is small.
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spelling pubmed-80762032021-04-27 Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling Sheng, Jinhua Shi, Yuchen Zhang, Qiao Sci Rep Article Generalized auto-calibrating partially parallel acquisitions (GRAPPA) and other parallel Magnetic Resonance Imaging (pMRI) methods restore the unacquired data in k-space by linearly calculating the undersampled data around the missing points. In order to obtain the weight of the linear calculation, a small number of auto-calibration signal (ACS) lines need to be sampled at the center of the k-space. Therefore, the sampling pattern used in this type of method is to full sample data in the middle area and undersample in the outer k-space with nominal reduction factors. In this paper, we propose a novel reconstruction method with a multiple variable density sampling (MVDS) that is different from traditional sampling patterns. Our method can significantly improve the image quality using multiple reduction factors with fewer ACS lines. Specifically, the traditional sampling pattern only uses a single reduction factor to uniformly undersample data in the region outside the ACS, but we use multiple reduction factors. When sampling the k-space data, we keep the ACS lines unchanged, use a smaller reduction factor for undersampling data near the ACS lines and a larger reduction factor for the outermost part of k-space. The error is lower after reconstruction of this region by undersampled data with a smaller reduction factor. The experimental results show that with the same amount of data sampled, using NL-GRAPPA to reconstruct the k-space data sampled by our method can result in lower noise and fewer artifacts than traditional methods. In particular, our method is extremely effective when the number of ACS lines is small. Nature Publishing Group UK 2021-04-26 /pmc/articles/PMC8076203/ /pubmed/33903702 http://dx.doi.org/10.1038/s41598-021-88567-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sheng, Jinhua
Shi, Yuchen
Zhang, Qiao
Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title_full Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title_fullStr Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title_full_unstemmed Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title_short Improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
title_sort improved parallel magnetic resonance imaging reconstruction with multiple variable density sampling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076203/
https://www.ncbi.nlm.nih.gov/pubmed/33903702
http://dx.doi.org/10.1038/s41598-021-88567-z
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