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Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer

N6-methyladenosine (m(6)A) is a common form of mRNA modification regulated by m6A RNA methylation regulators and play an important role in the progression of gastric cancer (GC). However, the prognostic role of m(6)A-related lncRNA in gastric cancer has not been fully explored. This study aims at ex...

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Autores principales: Wang, Haixu, Meng, Qingkai, Ma, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076577/
https://www.ncbi.nlm.nih.gov/pubmed/33928026
http://dx.doi.org/10.3389/fonc.2021.630260
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author Wang, Haixu
Meng, Qingkai
Ma, Bin
author_facet Wang, Haixu
Meng, Qingkai
Ma, Bin
author_sort Wang, Haixu
collection PubMed
description N6-methyladenosine (m(6)A) is a common form of mRNA modification regulated by m6A RNA methylation regulators and play an important role in the progression of gastric cancer (GC). However, the prognostic role of m(6)A-related lncRNA in gastric cancer has not been fully explored. This study aims at exploring the biological function and prognostic roles of the m(6)A-related lncRNA signature in gastric cancer. A total of 800 m6A-related lncRNAs were identified through Pearson correlation analysis between m6A regulators and all lncRNAs. Eleven m6A-related lncRNA signatures were identified through a survival analysis and the Kaplan-Meier (KM) curve analysis results suggest that patients in the low-risk group have a better overall survival (OS) and disease-free survival (DFS) outcome than the high-risk group. Also, the lncRNA signature can serve as an independent prognostic factor for OS and DFS. The gene set enrichment analysis (GSEA) result suggests that patients in the high-risk group were mainly enriched in the ECM receptor interaction, focal adhesion, and cytokine-cytokine receptor interaction pathway, while the low-risk group was characterized by the base excision repair pathway. We further constructed an individualized prognostic prediction model via the nomogram based on the independent prognostic factor for the OS and DFS, respectively. In addition, some candidate drugs aimed at GC risk group differentiation were identified using the Connective Map (CMAP) database. Lastly, four subgroups (C1, C2, C3, and C4) were identified based on the m6A-related lncRNA expression, through a consensus clustering algorithm. Among them, C1 and C2 have a greater likelihood to respond to immune checkpoint inhibitor immunotherapy, suggesting that the C1 and C2 subgroup might benefit from immunotherapy. In conclusion, the m6A-related lncRNA signature can independently predict the OS and DFS of GC and may aid in development of personalized immunotherapy strategies.
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spelling pubmed-80765772021-04-28 Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer Wang, Haixu Meng, Qingkai Ma, Bin Front Oncol Oncology N6-methyladenosine (m(6)A) is a common form of mRNA modification regulated by m6A RNA methylation regulators and play an important role in the progression of gastric cancer (GC). However, the prognostic role of m(6)A-related lncRNA in gastric cancer has not been fully explored. This study aims at exploring the biological function and prognostic roles of the m(6)A-related lncRNA signature in gastric cancer. A total of 800 m6A-related lncRNAs were identified through Pearson correlation analysis between m6A regulators and all lncRNAs. Eleven m6A-related lncRNA signatures were identified through a survival analysis and the Kaplan-Meier (KM) curve analysis results suggest that patients in the low-risk group have a better overall survival (OS) and disease-free survival (DFS) outcome than the high-risk group. Also, the lncRNA signature can serve as an independent prognostic factor for OS and DFS. The gene set enrichment analysis (GSEA) result suggests that patients in the high-risk group were mainly enriched in the ECM receptor interaction, focal adhesion, and cytokine-cytokine receptor interaction pathway, while the low-risk group was characterized by the base excision repair pathway. We further constructed an individualized prognostic prediction model via the nomogram based on the independent prognostic factor for the OS and DFS, respectively. In addition, some candidate drugs aimed at GC risk group differentiation were identified using the Connective Map (CMAP) database. Lastly, four subgroups (C1, C2, C3, and C4) were identified based on the m6A-related lncRNA expression, through a consensus clustering algorithm. Among them, C1 and C2 have a greater likelihood to respond to immune checkpoint inhibitor immunotherapy, suggesting that the C1 and C2 subgroup might benefit from immunotherapy. In conclusion, the m6A-related lncRNA signature can independently predict the OS and DFS of GC and may aid in development of personalized immunotherapy strategies. Frontiers Media S.A. 2021-04-13 /pmc/articles/PMC8076577/ /pubmed/33928026 http://dx.doi.org/10.3389/fonc.2021.630260 Text en Copyright © 2021 Wang, Meng and Ma https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wang, Haixu
Meng, Qingkai
Ma, Bin
Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title_full Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title_fullStr Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title_full_unstemmed Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title_short Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
title_sort characterization of the prognostic m6a-related lncrna signature in gastric cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076577/
https://www.ncbi.nlm.nih.gov/pubmed/33928026
http://dx.doi.org/10.3389/fonc.2021.630260
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