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Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens

Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on t...

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Autores principales: Hammerschmid, Dietmar, Germani, Francesca, Drusin, Salvador I., Fagnen, Charline, Schuster, Claudio D., Hoogewijs, David, Marti, Marcelo A., Venien-Bryan, Catherine, Moens, Luc, Van Doorslaer, Sabine, Sobott, Frank, Dewilde, Sylvia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076648/
https://www.ncbi.nlm.nih.gov/pubmed/33995893
http://dx.doi.org/10.1016/j.csbj.2021.03.031
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author Hammerschmid, Dietmar
Germani, Francesca
Drusin, Salvador I.
Fagnen, Charline
Schuster, Claudio D.
Hoogewijs, David
Marti, Marcelo A.
Venien-Bryan, Catherine
Moens, Luc
Van Doorslaer, Sabine
Sobott, Frank
Dewilde, Sylvia
author_facet Hammerschmid, Dietmar
Germani, Francesca
Drusin, Salvador I.
Fagnen, Charline
Schuster, Claudio D.
Hoogewijs, David
Marti, Marcelo A.
Venien-Bryan, Catherine
Moens, Luc
Van Doorslaer, Sabine
Sobott, Frank
Dewilde, Sylvia
author_sort Hammerschmid, Dietmar
collection PubMed
description Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on the nature of the transmitter domain, GCSs can have different activities and functions, including adenylate and di-guanylate cyclase, histidine kinase activity, aerotaxis and/or oxygen sensing function. The gram-negative delta-proteobacterium Geobacter sulfurreducens expresses a protein with a GD covalently linked to a four transmembrane domain, classified, by sequence similarity, as GCS (GsGCS). While its GD is fully characterized, not so its transmembrane domain, which is rarely found in the globin superfamily. In the present work, GsGCS was characterized spectroscopically and by native ion mobility-mass spectrometry in combination with cryo-electron microscopy. Although lacking high resolution, the oligomeric state and the electron density map were valuable for further rational modeling of the full-length GsGCS structure. This model demonstrates that GsGCS forms a transmembrane domain-driven tetramer with minimal contact between the GDs and with the heme groups oriented outward. This organization makes an intramolecular signal transduction less likely. Our results, including the auto-oxidation rate and redox potential, suggest a potential role for GsGCS as redox sensor or in a membrane-bound e(−)/H(+) transfer. As such, GsGCS might act as a player in connecting energy production to the oxidation of organic compounds and metal reduction. Database searches indicate that GDs linked to a four or seven helices transmembrane domain occur more frequently than expected.
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spelling pubmed-80766482021-05-13 Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens Hammerschmid, Dietmar Germani, Francesca Drusin, Salvador I. Fagnen, Charline Schuster, Claudio D. Hoogewijs, David Marti, Marcelo A. Venien-Bryan, Catherine Moens, Luc Van Doorslaer, Sabine Sobott, Frank Dewilde, Sylvia Comput Struct Biotechnol J Research Article Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on the nature of the transmitter domain, GCSs can have different activities and functions, including adenylate and di-guanylate cyclase, histidine kinase activity, aerotaxis and/or oxygen sensing function. The gram-negative delta-proteobacterium Geobacter sulfurreducens expresses a protein with a GD covalently linked to a four transmembrane domain, classified, by sequence similarity, as GCS (GsGCS). While its GD is fully characterized, not so its transmembrane domain, which is rarely found in the globin superfamily. In the present work, GsGCS was characterized spectroscopically and by native ion mobility-mass spectrometry in combination with cryo-electron microscopy. Although lacking high resolution, the oligomeric state and the electron density map were valuable for further rational modeling of the full-length GsGCS structure. This model demonstrates that GsGCS forms a transmembrane domain-driven tetramer with minimal contact between the GDs and with the heme groups oriented outward. This organization makes an intramolecular signal transduction less likely. Our results, including the auto-oxidation rate and redox potential, suggest a potential role for GsGCS as redox sensor or in a membrane-bound e(−)/H(+) transfer. As such, GsGCS might act as a player in connecting energy production to the oxidation of organic compounds and metal reduction. Database searches indicate that GDs linked to a four or seven helices transmembrane domain occur more frequently than expected. Research Network of Computational and Structural Biotechnology 2021-03-26 /pmc/articles/PMC8076648/ /pubmed/33995893 http://dx.doi.org/10.1016/j.csbj.2021.03.031 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Hammerschmid, Dietmar
Germani, Francesca
Drusin, Salvador I.
Fagnen, Charline
Schuster, Claudio D.
Hoogewijs, David
Marti, Marcelo A.
Venien-Bryan, Catherine
Moens, Luc
Van Doorslaer, Sabine
Sobott, Frank
Dewilde, Sylvia
Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title_full Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title_fullStr Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title_full_unstemmed Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title_short Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
title_sort structural modeling of a novel membrane-bound globin-coupled sensor in geobacter sulfurreducens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076648/
https://www.ncbi.nlm.nih.gov/pubmed/33995893
http://dx.doi.org/10.1016/j.csbj.2021.03.031
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