Cargando…
Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens
Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on t...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076648/ https://www.ncbi.nlm.nih.gov/pubmed/33995893 http://dx.doi.org/10.1016/j.csbj.2021.03.031 |
_version_ | 1783684725034975232 |
---|---|
author | Hammerschmid, Dietmar Germani, Francesca Drusin, Salvador I. Fagnen, Charline Schuster, Claudio D. Hoogewijs, David Marti, Marcelo A. Venien-Bryan, Catherine Moens, Luc Van Doorslaer, Sabine Sobott, Frank Dewilde, Sylvia |
author_facet | Hammerschmid, Dietmar Germani, Francesca Drusin, Salvador I. Fagnen, Charline Schuster, Claudio D. Hoogewijs, David Marti, Marcelo A. Venien-Bryan, Catherine Moens, Luc Van Doorslaer, Sabine Sobott, Frank Dewilde, Sylvia |
author_sort | Hammerschmid, Dietmar |
collection | PubMed |
description | Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on the nature of the transmitter domain, GCSs can have different activities and functions, including adenylate and di-guanylate cyclase, histidine kinase activity, aerotaxis and/or oxygen sensing function. The gram-negative delta-proteobacterium Geobacter sulfurreducens expresses a protein with a GD covalently linked to a four transmembrane domain, classified, by sequence similarity, as GCS (GsGCS). While its GD is fully characterized, not so its transmembrane domain, which is rarely found in the globin superfamily. In the present work, GsGCS was characterized spectroscopically and by native ion mobility-mass spectrometry in combination with cryo-electron microscopy. Although lacking high resolution, the oligomeric state and the electron density map were valuable for further rational modeling of the full-length GsGCS structure. This model demonstrates that GsGCS forms a transmembrane domain-driven tetramer with minimal contact between the GDs and with the heme groups oriented outward. This organization makes an intramolecular signal transduction less likely. Our results, including the auto-oxidation rate and redox potential, suggest a potential role for GsGCS as redox sensor or in a membrane-bound e(−)/H(+) transfer. As such, GsGCS might act as a player in connecting energy production to the oxidation of organic compounds and metal reduction. Database searches indicate that GDs linked to a four or seven helices transmembrane domain occur more frequently than expected. |
format | Online Article Text |
id | pubmed-8076648 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-80766482021-05-13 Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens Hammerschmid, Dietmar Germani, Francesca Drusin, Salvador I. Fagnen, Charline Schuster, Claudio D. Hoogewijs, David Marti, Marcelo A. Venien-Bryan, Catherine Moens, Luc Van Doorslaer, Sabine Sobott, Frank Dewilde, Sylvia Comput Struct Biotechnol J Research Article Globin-coupled sensors (GCS) usually consist of three domains: a sensor/globin, a linker, and a transmitter domain. The globin domain (GD), activated by ligand binding and/or redox change, induces an intramolecular signal transduction resulting in a response of the transmitter domain. Depending on the nature of the transmitter domain, GCSs can have different activities and functions, including adenylate and di-guanylate cyclase, histidine kinase activity, aerotaxis and/or oxygen sensing function. The gram-negative delta-proteobacterium Geobacter sulfurreducens expresses a protein with a GD covalently linked to a four transmembrane domain, classified, by sequence similarity, as GCS (GsGCS). While its GD is fully characterized, not so its transmembrane domain, which is rarely found in the globin superfamily. In the present work, GsGCS was characterized spectroscopically and by native ion mobility-mass spectrometry in combination with cryo-electron microscopy. Although lacking high resolution, the oligomeric state and the electron density map were valuable for further rational modeling of the full-length GsGCS structure. This model demonstrates that GsGCS forms a transmembrane domain-driven tetramer with minimal contact between the GDs and with the heme groups oriented outward. This organization makes an intramolecular signal transduction less likely. Our results, including the auto-oxidation rate and redox potential, suggest a potential role for GsGCS as redox sensor or in a membrane-bound e(−)/H(+) transfer. As such, GsGCS might act as a player in connecting energy production to the oxidation of organic compounds and metal reduction. Database searches indicate that GDs linked to a four or seven helices transmembrane domain occur more frequently than expected. Research Network of Computational and Structural Biotechnology 2021-03-26 /pmc/articles/PMC8076648/ /pubmed/33995893 http://dx.doi.org/10.1016/j.csbj.2021.03.031 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Hammerschmid, Dietmar Germani, Francesca Drusin, Salvador I. Fagnen, Charline Schuster, Claudio D. Hoogewijs, David Marti, Marcelo A. Venien-Bryan, Catherine Moens, Luc Van Doorslaer, Sabine Sobott, Frank Dewilde, Sylvia Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title | Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title_full | Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title_fullStr | Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title_full_unstemmed | Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title_short | Structural modeling of a novel membrane-bound globin-coupled sensor in Geobacter sulfurreducens |
title_sort | structural modeling of a novel membrane-bound globin-coupled sensor in geobacter sulfurreducens |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8076648/ https://www.ncbi.nlm.nih.gov/pubmed/33995893 http://dx.doi.org/10.1016/j.csbj.2021.03.031 |
work_keys_str_mv | AT hammerschmiddietmar structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT germanifrancesca structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT drusinsalvadori structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT fagnencharline structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT schusterclaudiod structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT hoogewijsdavid structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT martimarceloa structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT venienbryancatherine structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT moensluc structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT vandoorslaersabine structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT sobottfrank structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens AT dewildesylvia structuralmodelingofanovelmembraneboundglobincoupledsensoringeobactersulfurreducens |