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A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs
Musculoskeletal disorders affect the locomotor system and are the leading contributor to disability worldwide. Patients suffer chronic pain and limitations in mobility, dexterity, and functional ability. Musculoskeletal (bone) X-ray is an essential tool in diagnosing the abnormalities. In recent yea...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8079683/ https://www.ncbi.nlm.nih.gov/pubmed/33907257 http://dx.doi.org/10.1038/s41598-021-88578-w |
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author | He, Minliang Wang, Xuming Zhao, Yijun |
author_facet | He, Minliang Wang, Xuming Zhao, Yijun |
author_sort | He, Minliang |
collection | PubMed |
description | Musculoskeletal disorders affect the locomotor system and are the leading contributor to disability worldwide. Patients suffer chronic pain and limitations in mobility, dexterity, and functional ability. Musculoskeletal (bone) X-ray is an essential tool in diagnosing the abnormalities. In recent years, deep learning algorithms have increasingly been applied in musculoskeletal radiology and have produced remarkable results. In our study, we introduce a new calibrated ensemble of deep learners for the task of identifying abnormal musculoskeletal radiographs. Our model leverages the strengths of three baseline deep neural networks (ConvNet, ResNet, and DenseNet), which are typically employed either directly or as the backbone architecture in the existing deep learning-based approaches in this domain. Experimental results based on the public MURA dataset demonstrate that our proposed model outperforms three individual models and a traditional ensemble learner, achieving an overall performance of (AUC: 0.93, Accuracy: 0.87, Precision: 0.93, Recall: 0.81, Cohen’s kappa: 0.74). The model also outperforms expert radiologists in three out of the seven upper extremity anatomical regions with a leading performance of (AUC: 0.97, Accuracy: 0.93, Precision: 0.90, Recall:0.97, Cohen’s kappa: 0.85) in the humerus region. We further apply the class activation map technique to highlight the areas essential to our model’s decision-making process. Given that the best radiologist performance is between 0.73 and 0.78 in Cohen’s kappa statistic, our study provides convincing results supporting the utility of a calibrated ensemble approach for assessing abnormalities in musculoskeletal X-rays. |
format | Online Article Text |
id | pubmed-8079683 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80796832021-04-28 A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs He, Minliang Wang, Xuming Zhao, Yijun Sci Rep Article Musculoskeletal disorders affect the locomotor system and are the leading contributor to disability worldwide. Patients suffer chronic pain and limitations in mobility, dexterity, and functional ability. Musculoskeletal (bone) X-ray is an essential tool in diagnosing the abnormalities. In recent years, deep learning algorithms have increasingly been applied in musculoskeletal radiology and have produced remarkable results. In our study, we introduce a new calibrated ensemble of deep learners for the task of identifying abnormal musculoskeletal radiographs. Our model leverages the strengths of three baseline deep neural networks (ConvNet, ResNet, and DenseNet), which are typically employed either directly or as the backbone architecture in the existing deep learning-based approaches in this domain. Experimental results based on the public MURA dataset demonstrate that our proposed model outperforms three individual models and a traditional ensemble learner, achieving an overall performance of (AUC: 0.93, Accuracy: 0.87, Precision: 0.93, Recall: 0.81, Cohen’s kappa: 0.74). The model also outperforms expert radiologists in three out of the seven upper extremity anatomical regions with a leading performance of (AUC: 0.97, Accuracy: 0.93, Precision: 0.90, Recall:0.97, Cohen’s kappa: 0.85) in the humerus region. We further apply the class activation map technique to highlight the areas essential to our model’s decision-making process. Given that the best radiologist performance is between 0.73 and 0.78 in Cohen’s kappa statistic, our study provides convincing results supporting the utility of a calibrated ensemble approach for assessing abnormalities in musculoskeletal X-rays. Nature Publishing Group UK 2021-04-27 /pmc/articles/PMC8079683/ /pubmed/33907257 http://dx.doi.org/10.1038/s41598-021-88578-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article He, Minliang Wang, Xuming Zhao, Yijun A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title | A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title_full | A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title_fullStr | A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title_full_unstemmed | A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title_short | A calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
title_sort | calibrated deep learning ensemble for abnormality detection in musculoskeletal radiographs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8079683/ https://www.ncbi.nlm.nih.gov/pubmed/33907257 http://dx.doi.org/10.1038/s41598-021-88578-w |
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