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Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma

We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferropt...

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Autores principales: Lu, Tong, Xu, Ran, Li, Qi, Zhao, Jia-ying, Peng, Bo, Zhang, Han, Guo, Ji-da, Zhang, Sheng-qiang, Li, Hua-wei, Wang, Jun, Zhang, Lin-you
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080401/
https://www.ncbi.nlm.nih.gov/pubmed/33981829
http://dx.doi.org/10.1016/j.omto.2021.02.011
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author Lu, Tong
Xu, Ran
Li, Qi
Zhao, Jia-ying
Peng, Bo
Zhang, Han
Guo, Ji-da
Zhang, Sheng-qiang
Li, Hua-wei
Wang, Jun
Zhang, Lin-you
author_facet Lu, Tong
Xu, Ran
Li, Qi
Zhao, Jia-ying
Peng, Bo
Zhang, Han
Guo, Ji-da
Zhang, Sheng-qiang
Li, Hua-wei
Wang, Jun
Zhang, Lin-you
author_sort Lu, Tong
collection PubMed
description We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferroptosis-related gene set was obtained from the FerrDb database. We identified 45 ferroptosis-related genes that were differentially expressed, including enrichment in genes involved in the immune system process. We established a ferroptosis-related gene-based prognostic model based on the results of univariate Cox regression and multivariate Cox regression analyses, with an area under the curve (AUC) of 0.76 (3 years). We found that the patients with low-risk scores showed a higher proportion of CD8(+) T cells, CD4(+) memory activated T cells, etc. Finally, a predictive ferroptosis-related prognostic nomogram, which included the predictive values of age, gender, grade, TNM stage, and risk score, was established to predict overall survival. In sum, we developed a ferroptosis-related gene-based prognostic model that provides novel insights into the prediction of ESCC prognosis and identifies the relevance of the immune microenvironment for patient outcomes.
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spelling pubmed-80804012021-05-11 Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma Lu, Tong Xu, Ran Li, Qi Zhao, Jia-ying Peng, Bo Zhang, Han Guo, Ji-da Zhang, Sheng-qiang Li, Hua-wei Wang, Jun Zhang, Lin-you Mol Ther Oncolytics Original Article We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferroptosis-related gene set was obtained from the FerrDb database. We identified 45 ferroptosis-related genes that were differentially expressed, including enrichment in genes involved in the immune system process. We established a ferroptosis-related gene-based prognostic model based on the results of univariate Cox regression and multivariate Cox regression analyses, with an area under the curve (AUC) of 0.76 (3 years). We found that the patients with low-risk scores showed a higher proportion of CD8(+) T cells, CD4(+) memory activated T cells, etc. Finally, a predictive ferroptosis-related prognostic nomogram, which included the predictive values of age, gender, grade, TNM stage, and risk score, was established to predict overall survival. In sum, we developed a ferroptosis-related gene-based prognostic model that provides novel insights into the prediction of ESCC prognosis and identifies the relevance of the immune microenvironment for patient outcomes. American Society of Gene & Cell Therapy 2021-02-20 /pmc/articles/PMC8080401/ /pubmed/33981829 http://dx.doi.org/10.1016/j.omto.2021.02.011 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Lu, Tong
Xu, Ran
Li, Qi
Zhao, Jia-ying
Peng, Bo
Zhang, Han
Guo, Ji-da
Zhang, Sheng-qiang
Li, Hua-wei
Wang, Jun
Zhang, Lin-you
Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title_full Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title_fullStr Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title_full_unstemmed Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title_short Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
title_sort systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080401/
https://www.ncbi.nlm.nih.gov/pubmed/33981829
http://dx.doi.org/10.1016/j.omto.2021.02.011
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