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Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma
We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferropt...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society of Gene & Cell Therapy
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080401/ https://www.ncbi.nlm.nih.gov/pubmed/33981829 http://dx.doi.org/10.1016/j.omto.2021.02.011 |
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author | Lu, Tong Xu, Ran Li, Qi Zhao, Jia-ying Peng, Bo Zhang, Han Guo, Ji-da Zhang, Sheng-qiang Li, Hua-wei Wang, Jun Zhang, Lin-you |
author_facet | Lu, Tong Xu, Ran Li, Qi Zhao, Jia-ying Peng, Bo Zhang, Han Guo, Ji-da Zhang, Sheng-qiang Li, Hua-wei Wang, Jun Zhang, Lin-you |
author_sort | Lu, Tong |
collection | PubMed |
description | We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferroptosis-related gene set was obtained from the FerrDb database. We identified 45 ferroptosis-related genes that were differentially expressed, including enrichment in genes involved in the immune system process. We established a ferroptosis-related gene-based prognostic model based on the results of univariate Cox regression and multivariate Cox regression analyses, with an area under the curve (AUC) of 0.76 (3 years). We found that the patients with low-risk scores showed a higher proportion of CD8(+) T cells, CD4(+) memory activated T cells, etc. Finally, a predictive ferroptosis-related prognostic nomogram, which included the predictive values of age, gender, grade, TNM stage, and risk score, was established to predict overall survival. In sum, we developed a ferroptosis-related gene-based prognostic model that provides novel insights into the prediction of ESCC prognosis and identifies the relevance of the immune microenvironment for patient outcomes. |
format | Online Article Text |
id | pubmed-8080401 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Society of Gene & Cell Therapy |
record_format | MEDLINE/PubMed |
spelling | pubmed-80804012021-05-11 Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma Lu, Tong Xu, Ran Li, Qi Zhao, Jia-ying Peng, Bo Zhang, Han Guo, Ji-da Zhang, Sheng-qiang Li, Hua-wei Wang, Jun Zhang, Lin-you Mol Ther Oncolytics Original Article We developed a predictive model associated with ferroptosis to provide a more comprehensive view of esophageal squamous cell carcinoma (ESCC) immunotherapy. Gene expression data and corresponding clinical outcomes were obtained from the GEO and The Cancer Genome Atlas (TCGA) databases, and a ferroptosis-related gene set was obtained from the FerrDb database. We identified 45 ferroptosis-related genes that were differentially expressed, including enrichment in genes involved in the immune system process. We established a ferroptosis-related gene-based prognostic model based on the results of univariate Cox regression and multivariate Cox regression analyses, with an area under the curve (AUC) of 0.76 (3 years). We found that the patients with low-risk scores showed a higher proportion of CD8(+) T cells, CD4(+) memory activated T cells, etc. Finally, a predictive ferroptosis-related prognostic nomogram, which included the predictive values of age, gender, grade, TNM stage, and risk score, was established to predict overall survival. In sum, we developed a ferroptosis-related gene-based prognostic model that provides novel insights into the prediction of ESCC prognosis and identifies the relevance of the immune microenvironment for patient outcomes. American Society of Gene & Cell Therapy 2021-02-20 /pmc/articles/PMC8080401/ /pubmed/33981829 http://dx.doi.org/10.1016/j.omto.2021.02.011 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Article Lu, Tong Xu, Ran Li, Qi Zhao, Jia-ying Peng, Bo Zhang, Han Guo, Ji-da Zhang, Sheng-qiang Li, Hua-wei Wang, Jun Zhang, Lin-you Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title | Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title_full | Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title_fullStr | Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title_full_unstemmed | Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title_short | Systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
title_sort | systematic profiling of ferroptosis gene signatures predicts prognostic factors in esophageal squamous cell carcinoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080401/ https://www.ncbi.nlm.nih.gov/pubmed/33981829 http://dx.doi.org/10.1016/j.omto.2021.02.011 |
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