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An RNA-centric historical narrative around the Protein Data Bank

Some of the amazing contributions brought to the scientific community by the Protein Data Bank (PDB) are described. The focus is on nucleic acid structures with a bias toward RNA. The evolution and key roles in science of the PDB and other structural databases for nucleic acids illustrate how small...

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Detalles Bibliográficos
Autores principales: Westhof, Eric, Leontis, Neocles B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Biochemistry and Molecular Biology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080527/
https://www.ncbi.nlm.nih.gov/pubmed/33744291
http://dx.doi.org/10.1016/j.jbc.2021.100555
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author Westhof, Eric
Leontis, Neocles B.
author_facet Westhof, Eric
Leontis, Neocles B.
author_sort Westhof, Eric
collection PubMed
description Some of the amazing contributions brought to the scientific community by the Protein Data Bank (PDB) are described. The focus is on nucleic acid structures with a bias toward RNA. The evolution and key roles in science of the PDB and other structural databases for nucleic acids illustrate how small initial ideas can become huge and indispensable resources with the unflinching willingness of scientists to cooperate globally. The progress in the understanding of the molecular interactions driving RNA architectures followed the rapid increase in RNA structures in the PDB. That increase was consecutive to improvements in chemical synthesis and purification of RNA molecules, as well as in biophysical methods for structure determination and computer technology. The RNA modeling efforts from the early beginnings are also described together with their links to the state of structural knowledge and technological development. Structures of RNA and of its assemblies are physical objects, which, together with genomic data, allow us to integrate present-day biological functions and the historical evolution in all living species on earth.
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spelling pubmed-80805272021-05-06 An RNA-centric historical narrative around the Protein Data Bank Westhof, Eric Leontis, Neocles B. J Biol Chem JBC Reviews Some of the amazing contributions brought to the scientific community by the Protein Data Bank (PDB) are described. The focus is on nucleic acid structures with a bias toward RNA. The evolution and key roles in science of the PDB and other structural databases for nucleic acids illustrate how small initial ideas can become huge and indispensable resources with the unflinching willingness of scientists to cooperate globally. The progress in the understanding of the molecular interactions driving RNA architectures followed the rapid increase in RNA structures in the PDB. That increase was consecutive to improvements in chemical synthesis and purification of RNA molecules, as well as in biophysical methods for structure determination and computer technology. The RNA modeling efforts from the early beginnings are also described together with their links to the state of structural knowledge and technological development. Structures of RNA and of its assemblies are physical objects, which, together with genomic data, allow us to integrate present-day biological functions and the historical evolution in all living species on earth. American Society for Biochemistry and Molecular Biology 2021-03-18 /pmc/articles/PMC8080527/ /pubmed/33744291 http://dx.doi.org/10.1016/j.jbc.2021.100555 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle JBC Reviews
Westhof, Eric
Leontis, Neocles B.
An RNA-centric historical narrative around the Protein Data Bank
title An RNA-centric historical narrative around the Protein Data Bank
title_full An RNA-centric historical narrative around the Protein Data Bank
title_fullStr An RNA-centric historical narrative around the Protein Data Bank
title_full_unstemmed An RNA-centric historical narrative around the Protein Data Bank
title_short An RNA-centric historical narrative around the Protein Data Bank
title_sort rna-centric historical narrative around the protein data bank
topic JBC Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080527/
https://www.ncbi.nlm.nih.gov/pubmed/33744291
http://dx.doi.org/10.1016/j.jbc.2021.100555
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