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Single-cell sequencing techniques from individual to multiomics analyses

Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data...

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Autores principales: Kashima, Yukie, Sakamoto, Yoshitaka, Kaneko, Keiya, Seki, Masahide, Suzuki, Yutaka, Suzuki, Ayako
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080663/
https://www.ncbi.nlm.nih.gov/pubmed/32929221
http://dx.doi.org/10.1038/s12276-020-00499-2
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author Kashima, Yukie
Sakamoto, Yoshitaka
Kaneko, Keiya
Seki, Masahide
Suzuki, Yutaka
Suzuki, Ayako
author_facet Kashima, Yukie
Sakamoto, Yoshitaka
Kaneko, Keiya
Seki, Masahide
Suzuki, Yutaka
Suzuki, Ayako
author_sort Kashima, Yukie
collection PubMed
description Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data derived from single-cell RNA sequencing and chromatin accessibility data derived from single-cell ATAC-seq, there are several computational integration methods. We also describe single-cell experimental methods for the simultaneous measurement of two or more omics layers. We can achieve a detailed understanding of the basic molecular profiles and those associated with disease in each cell by utilizing a large number of single-cell sequencing techniques and the accumulated data sets.
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spelling pubmed-80806632021-04-29 Single-cell sequencing techniques from individual to multiomics analyses Kashima, Yukie Sakamoto, Yoshitaka Kaneko, Keiya Seki, Masahide Suzuki, Yutaka Suzuki, Ayako Exp Mol Med Review Article Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data derived from single-cell RNA sequencing and chromatin accessibility data derived from single-cell ATAC-seq, there are several computational integration methods. We also describe single-cell experimental methods for the simultaneous measurement of two or more omics layers. We can achieve a detailed understanding of the basic molecular profiles and those associated with disease in each cell by utilizing a large number of single-cell sequencing techniques and the accumulated data sets. Nature Publishing Group UK 2020-09-15 /pmc/articles/PMC8080663/ /pubmed/32929221 http://dx.doi.org/10.1038/s12276-020-00499-2 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Review Article
Kashima, Yukie
Sakamoto, Yoshitaka
Kaneko, Keiya
Seki, Masahide
Suzuki, Yutaka
Suzuki, Ayako
Single-cell sequencing techniques from individual to multiomics analyses
title Single-cell sequencing techniques from individual to multiomics analyses
title_full Single-cell sequencing techniques from individual to multiomics analyses
title_fullStr Single-cell sequencing techniques from individual to multiomics analyses
title_full_unstemmed Single-cell sequencing techniques from individual to multiomics analyses
title_short Single-cell sequencing techniques from individual to multiomics analyses
title_sort single-cell sequencing techniques from individual to multiomics analyses
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080663/
https://www.ncbi.nlm.nih.gov/pubmed/32929221
http://dx.doi.org/10.1038/s12276-020-00499-2
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