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Single-cell sequencing techniques from individual to multiomics analyses
Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080663/ https://www.ncbi.nlm.nih.gov/pubmed/32929221 http://dx.doi.org/10.1038/s12276-020-00499-2 |
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author | Kashima, Yukie Sakamoto, Yoshitaka Kaneko, Keiya Seki, Masahide Suzuki, Yutaka Suzuki, Ayako |
author_facet | Kashima, Yukie Sakamoto, Yoshitaka Kaneko, Keiya Seki, Masahide Suzuki, Yutaka Suzuki, Ayako |
author_sort | Kashima, Yukie |
collection | PubMed |
description | Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data derived from single-cell RNA sequencing and chromatin accessibility data derived from single-cell ATAC-seq, there are several computational integration methods. We also describe single-cell experimental methods for the simultaneous measurement of two or more omics layers. We can achieve a detailed understanding of the basic molecular profiles and those associated with disease in each cell by utilizing a large number of single-cell sequencing techniques and the accumulated data sets. |
format | Online Article Text |
id | pubmed-8080663 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80806632021-04-29 Single-cell sequencing techniques from individual to multiomics analyses Kashima, Yukie Sakamoto, Yoshitaka Kaneko, Keiya Seki, Masahide Suzuki, Yutaka Suzuki, Ayako Exp Mol Med Review Article Here, we review single-cell sequencing techniques for individual and multiomics profiling in single cells. We mainly describe single-cell genomic, epigenomic, and transcriptomic methods, and examples of their applications. For the integration of multilayered data sets, such as the transcriptome data derived from single-cell RNA sequencing and chromatin accessibility data derived from single-cell ATAC-seq, there are several computational integration methods. We also describe single-cell experimental methods for the simultaneous measurement of two or more omics layers. We can achieve a detailed understanding of the basic molecular profiles and those associated with disease in each cell by utilizing a large number of single-cell sequencing techniques and the accumulated data sets. Nature Publishing Group UK 2020-09-15 /pmc/articles/PMC8080663/ /pubmed/32929221 http://dx.doi.org/10.1038/s12276-020-00499-2 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Review Article Kashima, Yukie Sakamoto, Yoshitaka Kaneko, Keiya Seki, Masahide Suzuki, Yutaka Suzuki, Ayako Single-cell sequencing techniques from individual to multiomics analyses |
title | Single-cell sequencing techniques from individual to multiomics analyses |
title_full | Single-cell sequencing techniques from individual to multiomics analyses |
title_fullStr | Single-cell sequencing techniques from individual to multiomics analyses |
title_full_unstemmed | Single-cell sequencing techniques from individual to multiomics analyses |
title_short | Single-cell sequencing techniques from individual to multiomics analyses |
title_sort | single-cell sequencing techniques from individual to multiomics analyses |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8080663/ https://www.ncbi.nlm.nih.gov/pubmed/32929221 http://dx.doi.org/10.1038/s12276-020-00499-2 |
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