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Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis
Iris lactea var. chinensis is a well-regarded ornamental plant in the genus Iris (family Iridaceae). In this report, we present the complete chloroplast (cp) genome sequence of I. lactea var. chinensis for the first time. The complete cp genome of I. lactea var. chinensis was assembled using high-th...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8081313/ https://www.ncbi.nlm.nih.gov/pubmed/33997284 http://dx.doi.org/10.1080/23802359.2020.1847611 |
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author | Cai, Xiaoran Zhang, Bin Wang, Shuai Cheng, Yueqin Wang, Hongwei |
author_facet | Cai, Xiaoran Zhang, Bin Wang, Shuai Cheng, Yueqin Wang, Hongwei |
author_sort | Cai, Xiaoran |
collection | PubMed |
description | Iris lactea var. chinensis is a well-regarded ornamental plant in the genus Iris (family Iridaceae). In this report, we present the complete chloroplast (cp) genome sequence of I. lactea var. chinensis for the first time. The complete cp genome of I. lactea var. chinensis was assembled using high-throughput sequencing, and phylogenetic analysis was undertaken based on a dataset of coding regions. The cp genome of I. lactea var. chinensis measures 152,409 bp in length, with regions having two inverted copies (IR 26,026 bp), and separated by the large single copy (LSC 82,256 bp) and small single copy (SSC 18,101 bp) regions. The cp genome encodes 133 unique genes, including 87 different protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Based on a dataset of 69 chloroplast coding regions, the maximum-likelihood (ML) phylogenetic tree analysis indicated that Iris lactea var. chinensis clusters closely with Iris sanguinea. Thus, the complete chloroplast genome presented in this report may provide valuable genetic information not only for the future exploitation and utilization of this plant resource but also for further research investigating its relationship with other Iris species. |
format | Online Article Text |
id | pubmed-8081313 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80813132021-05-13 Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis Cai, Xiaoran Zhang, Bin Wang, Shuai Cheng, Yueqin Wang, Hongwei Mitochondrial DNA B Resour Mitogenome Announcement Iris lactea var. chinensis is a well-regarded ornamental plant in the genus Iris (family Iridaceae). In this report, we present the complete chloroplast (cp) genome sequence of I. lactea var. chinensis for the first time. The complete cp genome of I. lactea var. chinensis was assembled using high-throughput sequencing, and phylogenetic analysis was undertaken based on a dataset of coding regions. The cp genome of I. lactea var. chinensis measures 152,409 bp in length, with regions having two inverted copies (IR 26,026 bp), and separated by the large single copy (LSC 82,256 bp) and small single copy (SSC 18,101 bp) regions. The cp genome encodes 133 unique genes, including 87 different protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Based on a dataset of 69 chloroplast coding regions, the maximum-likelihood (ML) phylogenetic tree analysis indicated that Iris lactea var. chinensis clusters closely with Iris sanguinea. Thus, the complete chloroplast genome presented in this report may provide valuable genetic information not only for the future exploitation and utilization of this plant resource but also for further research investigating its relationship with other Iris species. Taylor & Francis 2021-04-27 /pmc/articles/PMC8081313/ /pubmed/33997284 http://dx.doi.org/10.1080/23802359.2020.1847611 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Cai, Xiaoran Zhang, Bin Wang, Shuai Cheng, Yueqin Wang, Hongwei Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title | Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title_full | Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title_fullStr | Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title_full_unstemmed | Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title_short | Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis |
title_sort | characterization and phylogenetic analysis of the chloroplast genome of iris lactea var. chinensis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8081313/ https://www.ncbi.nlm.nih.gov/pubmed/33997284 http://dx.doi.org/10.1080/23802359.2020.1847611 |
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