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Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis

BACKGROUND: The COVID-19 pandemic has placed unprecedented stress on economies, food systems, and health care resources in Latin America and the Caribbean (LAC). Existing surveillance provides a proxy of the COVID-19 caseload and mortalities; however, these measures make it difficult to identify the...

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Autores principales: Post, Lori, Ohiomoba, Ramael O, Maras, Ashley, Watts, Sean J, Moss, Charles B, Murphy, Robert Leo, Ison, Michael G, Achenbach, Chad J, Resnick, Danielle, Singh, Lauren Nadya, White, Janine, Chaudhury, Azraa S, Boctor, Michael J, Welch, Sarah B, Oehmke, James Francis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8083950/
https://www.ncbi.nlm.nih.gov/pubmed/33852413
http://dx.doi.org/10.2196/25728
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author Post, Lori
Ohiomoba, Ramael O
Maras, Ashley
Watts, Sean J
Moss, Charles B
Murphy, Robert Leo
Ison, Michael G
Achenbach, Chad J
Resnick, Danielle
Singh, Lauren Nadya
White, Janine
Chaudhury, Azraa S
Boctor, Michael J
Welch, Sarah B
Oehmke, James Francis
author_facet Post, Lori
Ohiomoba, Ramael O
Maras, Ashley
Watts, Sean J
Moss, Charles B
Murphy, Robert Leo
Ison, Michael G
Achenbach, Chad J
Resnick, Danielle
Singh, Lauren Nadya
White, Janine
Chaudhury, Azraa S
Boctor, Michael J
Welch, Sarah B
Oehmke, James Francis
author_sort Post, Lori
collection PubMed
description BACKGROUND: The COVID-19 pandemic has placed unprecedented stress on economies, food systems, and health care resources in Latin America and the Caribbean (LAC). Existing surveillance provides a proxy of the COVID-19 caseload and mortalities; however, these measures make it difficult to identify the dynamics of the pandemic and places where outbreaks are likely to occur. Moreover, existing surveillance techniques have failed to measure the dynamics of the pandemic. OBJECTIVE: This study aimed to provide additional surveillance metrics for COVID-19 transmission to track changes in the speed, acceleration, jerk, and persistence in the transmission of the pandemic more accurately than existing metrics. METHODS: Through a longitudinal trend analysis, we extracted COVID-19 data over 45 days from public health registries. We used an empirical difference equation to monitor the daily number of cases in the LAC as a function of the prior number of cases, the level of testing, and weekly shift variables based on a dynamic panel model that was estimated using the generalized method of moments approach by implementing the Arellano–Bond estimator in R. COVID-19 transmission rates were tracked for the LAC between September 30 and October 6, 2020, and between October 7 and 13, 2020. RESULTS: The LAC saw a reduction in the speed, acceleration, and jerk for the week of October 13, 2020, compared to the week of October 6, 2020, accompanied by reductions in new cases and the 7-day moving average. For the week of October 6, 2020, Belize reported the highest acceleration and jerk, at 1.7 and 1.8, respectively, which is particularly concerning, given its high mortality rate. The Bahamas also had a high acceleration at 1.5. In total, 11 countries had a positive acceleration during the week of October 6, 2020, whereas only 6 countries had a positive acceleration for the week of October 13, 2020. The TAC displayed an overall positive trend, with a speed of 10.40, acceleration of 0.27, and jerk of –0.31, all of which decreased in the subsequent week to 9.04, –0.81, and –0.03, respectively. CONCLUSIONS: Metrics such as new cases, cumulative cases, deaths, and 7-day moving averages provide a static view of the pandemic but fail to identify where and the speed at which SARS-CoV-2 infects new individuals, the rate of acceleration or deceleration of the pandemic, and weekly comparison of the rate of acceleration of the pandemic indicate impending explosive growth or control of the pandemic. Enhanced surveillance will inform policymakers and leaders in the LAC about COVID-19 outbreaks.
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spelling pubmed-80839502021-05-06 Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis Post, Lori Ohiomoba, Ramael O Maras, Ashley Watts, Sean J Moss, Charles B Murphy, Robert Leo Ison, Michael G Achenbach, Chad J Resnick, Danielle Singh, Lauren Nadya White, Janine Chaudhury, Azraa S Boctor, Michael J Welch, Sarah B Oehmke, James Francis JMIR Public Health Surveill Original Paper BACKGROUND: The COVID-19 pandemic has placed unprecedented stress on economies, food systems, and health care resources in Latin America and the Caribbean (LAC). Existing surveillance provides a proxy of the COVID-19 caseload and mortalities; however, these measures make it difficult to identify the dynamics of the pandemic and places where outbreaks are likely to occur. Moreover, existing surveillance techniques have failed to measure the dynamics of the pandemic. OBJECTIVE: This study aimed to provide additional surveillance metrics for COVID-19 transmission to track changes in the speed, acceleration, jerk, and persistence in the transmission of the pandemic more accurately than existing metrics. METHODS: Through a longitudinal trend analysis, we extracted COVID-19 data over 45 days from public health registries. We used an empirical difference equation to monitor the daily number of cases in the LAC as a function of the prior number of cases, the level of testing, and weekly shift variables based on a dynamic panel model that was estimated using the generalized method of moments approach by implementing the Arellano–Bond estimator in R. COVID-19 transmission rates were tracked for the LAC between September 30 and October 6, 2020, and between October 7 and 13, 2020. RESULTS: The LAC saw a reduction in the speed, acceleration, and jerk for the week of October 13, 2020, compared to the week of October 6, 2020, accompanied by reductions in new cases and the 7-day moving average. For the week of October 6, 2020, Belize reported the highest acceleration and jerk, at 1.7 and 1.8, respectively, which is particularly concerning, given its high mortality rate. The Bahamas also had a high acceleration at 1.5. In total, 11 countries had a positive acceleration during the week of October 6, 2020, whereas only 6 countries had a positive acceleration for the week of October 13, 2020. The TAC displayed an overall positive trend, with a speed of 10.40, acceleration of 0.27, and jerk of –0.31, all of which decreased in the subsequent week to 9.04, –0.81, and –0.03, respectively. CONCLUSIONS: Metrics such as new cases, cumulative cases, deaths, and 7-day moving averages provide a static view of the pandemic but fail to identify where and the speed at which SARS-CoV-2 infects new individuals, the rate of acceleration or deceleration of the pandemic, and weekly comparison of the rate of acceleration of the pandemic indicate impending explosive growth or control of the pandemic. Enhanced surveillance will inform policymakers and leaders in the LAC about COVID-19 outbreaks. JMIR Publications 2021-04-27 /pmc/articles/PMC8083950/ /pubmed/33852413 http://dx.doi.org/10.2196/25728 Text en ©Lori Post, Ramael O Ohiomoba, Ashley Maras, Sean J Watts, Charles B Moss, Robert Leo Murphy, Michael G Ison, Chad J Achenbach, Danielle Resnick, Lauren Nadya Singh, Janine White, Azraa S Chaudhury, Michael J Boctor, Sarah B Welch, James Francis Oehmke. Originally published in JMIR Public Health and Surveillance (https://publichealth.jmir.org), 27.04.2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on https://publichealth.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Post, Lori
Ohiomoba, Ramael O
Maras, Ashley
Watts, Sean J
Moss, Charles B
Murphy, Robert Leo
Ison, Michael G
Achenbach, Chad J
Resnick, Danielle
Singh, Lauren Nadya
White, Janine
Chaudhury, Azraa S
Boctor, Michael J
Welch, Sarah B
Oehmke, James Francis
Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title_full Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title_fullStr Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title_full_unstemmed Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title_short Latin America and the Caribbean SARS-CoV-2 Surveillance: Longitudinal Trend Analysis
title_sort latin america and the caribbean sars-cov-2 surveillance: longitudinal trend analysis
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8083950/
https://www.ncbi.nlm.nih.gov/pubmed/33852413
http://dx.doi.org/10.2196/25728
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