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A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment
Background: Numerous studies have attempted to apply artificial intelligence (AI) in the dermatological field, mainly on the classification and segmentation of various dermatoses. However, researches under real clinical settings are scarce. Objectives: This study was aimed to construct a novel frame...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8085301/ https://www.ncbi.nlm.nih.gov/pubmed/33937279 http://dx.doi.org/10.3389/fmed.2021.626369 |
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author | Zhu, Chen-Yu Wang, Yu-Kun Chen, Hai-Peng Gao, Kun-Lun Shu, Chang Wang, Jun-Cheng Yan, Li-Feng Yang, Yi-Guang Xie, Feng-Ying Liu, Jie |
author_facet | Zhu, Chen-Yu Wang, Yu-Kun Chen, Hai-Peng Gao, Kun-Lun Shu, Chang Wang, Jun-Cheng Yan, Li-Feng Yang, Yi-Guang Xie, Feng-Ying Liu, Jie |
author_sort | Zhu, Chen-Yu |
collection | PubMed |
description | Background: Numerous studies have attempted to apply artificial intelligence (AI) in the dermatological field, mainly on the classification and segmentation of various dermatoses. However, researches under real clinical settings are scarce. Objectives: This study was aimed to construct a novel framework based on deep learning trained by a dataset that represented the real clinical environment in a tertiary class hospital in China, for better adaptation of the AI application in clinical practice among Asian patients. Methods: Our dataset was composed of 13,603 dermatologist-labeled dermoscopic images, containing 14 categories of diseases, namely lichen planus (LP), rosacea (Rosa), viral warts (VW), acne vulgaris (AV), keloid and hypertrophic scar (KAHS), eczema and dermatitis (EAD), dermatofibroma (DF), seborrheic dermatitis (SD), seborrheic keratosis (SK), melanocytic nevus (MN), hemangioma (Hem), psoriasis (Pso), port wine stain (PWS), and basal cell carcinoma (BCC). In this study, we applied Google's EfficientNet-b4 with pre-trained weights on ImageNet as the backbone of our CNN architecture. The final fully-connected classification layer was replaced with 14 output neurons. We added seven auxiliary classifiers to each of the intermediate layer groups. The modified model was retrained with our dataset and implemented using Pytorch. We constructed saliency maps to visualize our network's attention area of input images for its prediction. To explore the visual characteristics of different clinical classes, we also examined the internal image features learned by the proposed framework using t-SNE (t-distributed Stochastic Neighbor Embedding). Results: Test results showed that the proposed framework achieved a high level of classification performance with an overall accuracy of 0.948, a sensitivity of 0.934 and a specificity of 0.950. We also compared the performance of our algorithm with three most widely used CNN models which showed our model outperformed existing models with the highest area under curve (AUC) of 0.985. We further compared this model with 280 board-certificated dermatologists, and results showed a comparable performance level in an 8-class diagnostic task. Conclusions: The proposed framework retrained by the dataset that represented the real clinical environment in our department could accurately classify most common dermatoses that we encountered during outpatient practice including infectious and inflammatory dermatoses, benign and malignant cutaneous tumors. |
format | Online Article Text |
id | pubmed-8085301 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80853012021-05-01 A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment Zhu, Chen-Yu Wang, Yu-Kun Chen, Hai-Peng Gao, Kun-Lun Shu, Chang Wang, Jun-Cheng Yan, Li-Feng Yang, Yi-Guang Xie, Feng-Ying Liu, Jie Front Med (Lausanne) Medicine Background: Numerous studies have attempted to apply artificial intelligence (AI) in the dermatological field, mainly on the classification and segmentation of various dermatoses. However, researches under real clinical settings are scarce. Objectives: This study was aimed to construct a novel framework based on deep learning trained by a dataset that represented the real clinical environment in a tertiary class hospital in China, for better adaptation of the AI application in clinical practice among Asian patients. Methods: Our dataset was composed of 13,603 dermatologist-labeled dermoscopic images, containing 14 categories of diseases, namely lichen planus (LP), rosacea (Rosa), viral warts (VW), acne vulgaris (AV), keloid and hypertrophic scar (KAHS), eczema and dermatitis (EAD), dermatofibroma (DF), seborrheic dermatitis (SD), seborrheic keratosis (SK), melanocytic nevus (MN), hemangioma (Hem), psoriasis (Pso), port wine stain (PWS), and basal cell carcinoma (BCC). In this study, we applied Google's EfficientNet-b4 with pre-trained weights on ImageNet as the backbone of our CNN architecture. The final fully-connected classification layer was replaced with 14 output neurons. We added seven auxiliary classifiers to each of the intermediate layer groups. The modified model was retrained with our dataset and implemented using Pytorch. We constructed saliency maps to visualize our network's attention area of input images for its prediction. To explore the visual characteristics of different clinical classes, we also examined the internal image features learned by the proposed framework using t-SNE (t-distributed Stochastic Neighbor Embedding). Results: Test results showed that the proposed framework achieved a high level of classification performance with an overall accuracy of 0.948, a sensitivity of 0.934 and a specificity of 0.950. We also compared the performance of our algorithm with three most widely used CNN models which showed our model outperformed existing models with the highest area under curve (AUC) of 0.985. We further compared this model with 280 board-certificated dermatologists, and results showed a comparable performance level in an 8-class diagnostic task. Conclusions: The proposed framework retrained by the dataset that represented the real clinical environment in our department could accurately classify most common dermatoses that we encountered during outpatient practice including infectious and inflammatory dermatoses, benign and malignant cutaneous tumors. Frontiers Media S.A. 2021-04-16 /pmc/articles/PMC8085301/ /pubmed/33937279 http://dx.doi.org/10.3389/fmed.2021.626369 Text en Copyright © 2021 Zhu, Wang, Chen, Gao, Shu, Wang, Yan, Yang, Xie and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Zhu, Chen-Yu Wang, Yu-Kun Chen, Hai-Peng Gao, Kun-Lun Shu, Chang Wang, Jun-Cheng Yan, Li-Feng Yang, Yi-Guang Xie, Feng-Ying Liu, Jie A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title | A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title_full | A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title_fullStr | A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title_full_unstemmed | A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title_short | A Deep Learning Based Framework for Diagnosing Multiple Skin Diseases in a Clinical Environment |
title_sort | deep learning based framework for diagnosing multiple skin diseases in a clinical environment |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8085301/ https://www.ncbi.nlm.nih.gov/pubmed/33937279 http://dx.doi.org/10.3389/fmed.2021.626369 |
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