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Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India

The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) pr...

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Autores principales: Mukhopadhyay, Meenakshi, Mitra, Arup Kumar, Choudhury, Sudeshna Shyam, Ganguli, Sayak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086014/
https://www.ncbi.nlm.nih.gov/pubmed/33981820
http://dx.doi.org/10.1016/j.dib.2021.107041
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author Mukhopadhyay, Meenakshi
Mitra, Arup Kumar
Choudhury, Sudeshna Shyam
Ganguli, Sayak
author_facet Mukhopadhyay, Meenakshi
Mitra, Arup Kumar
Choudhury, Sudeshna Shyam
Ganguli, Sayak
author_sort Mukhopadhyay, Meenakshi
collection PubMed
description The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) prediction of the Illumina sequencing data indicated the abundance Proteobacteria (61%) followed closely by Bacterioidetes (35%). The top two most abundant genera identified, were Sphingobacterium and Acinetobacter respectively. Chemical properties of soil, such as pH, organic carbon content, available nitrogen, phosphorus, and potassium were also analyzed for enabling future researchers to correlate the abundance of microbial taxa with the prevalent conditions. These findings can be effectively used to formulate strategic microbiome engineering through bioaugmentation for a sustainable agricultural system.
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spelling pubmed-80860142021-05-11 Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India Mukhopadhyay, Meenakshi Mitra, Arup Kumar Choudhury, Sudeshna Shyam Ganguli, Sayak Data Brief Data Article The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) prediction of the Illumina sequencing data indicated the abundance Proteobacteria (61%) followed closely by Bacterioidetes (35%). The top two most abundant genera identified, were Sphingobacterium and Acinetobacter respectively. Chemical properties of soil, such as pH, organic carbon content, available nitrogen, phosphorus, and potassium were also analyzed for enabling future researchers to correlate the abundance of microbial taxa with the prevalent conditions. These findings can be effectively used to formulate strategic microbiome engineering through bioaugmentation for a sustainable agricultural system. Elsevier 2021-04-06 /pmc/articles/PMC8086014/ /pubmed/33981820 http://dx.doi.org/10.1016/j.dib.2021.107041 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Mukhopadhyay, Meenakshi
Mitra, Arup Kumar
Choudhury, Sudeshna Shyam
Ganguli, Sayak
Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title_full Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title_fullStr Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title_full_unstemmed Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title_short Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
title_sort metagenome dataset of lateritic soil microbiota from sadaipur, birbhum, west bengal, india
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086014/
https://www.ncbi.nlm.nih.gov/pubmed/33981820
http://dx.doi.org/10.1016/j.dib.2021.107041
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