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Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India
The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) pr...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086014/ https://www.ncbi.nlm.nih.gov/pubmed/33981820 http://dx.doi.org/10.1016/j.dib.2021.107041 |
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author | Mukhopadhyay, Meenakshi Mitra, Arup Kumar Choudhury, Sudeshna Shyam Ganguli, Sayak |
author_facet | Mukhopadhyay, Meenakshi Mitra, Arup Kumar Choudhury, Sudeshna Shyam Ganguli, Sayak |
author_sort | Mukhopadhyay, Meenakshi |
collection | PubMed |
description | The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) prediction of the Illumina sequencing data indicated the abundance Proteobacteria (61%) followed closely by Bacterioidetes (35%). The top two most abundant genera identified, were Sphingobacterium and Acinetobacter respectively. Chemical properties of soil, such as pH, organic carbon content, available nitrogen, phosphorus, and potassium were also analyzed for enabling future researchers to correlate the abundance of microbial taxa with the prevalent conditions. These findings can be effectively used to formulate strategic microbiome engineering through bioaugmentation for a sustainable agricultural system. |
format | Online Article Text |
id | pubmed-8086014 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-80860142021-05-11 Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India Mukhopadhyay, Meenakshi Mitra, Arup Kumar Choudhury, Sudeshna Shyam Ganguli, Sayak Data Brief Data Article The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the ‘Rarh’ region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) prediction of the Illumina sequencing data indicated the abundance Proteobacteria (61%) followed closely by Bacterioidetes (35%). The top two most abundant genera identified, were Sphingobacterium and Acinetobacter respectively. Chemical properties of soil, such as pH, organic carbon content, available nitrogen, phosphorus, and potassium were also analyzed for enabling future researchers to correlate the abundance of microbial taxa with the prevalent conditions. These findings can be effectively used to formulate strategic microbiome engineering through bioaugmentation for a sustainable agricultural system. Elsevier 2021-04-06 /pmc/articles/PMC8086014/ /pubmed/33981820 http://dx.doi.org/10.1016/j.dib.2021.107041 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Mukhopadhyay, Meenakshi Mitra, Arup Kumar Choudhury, Sudeshna Shyam Ganguli, Sayak Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title | Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title_full | Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title_fullStr | Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title_full_unstemmed | Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title_short | Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India |
title_sort | metagenome dataset of lateritic soil microbiota from sadaipur, birbhum, west bengal, india |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086014/ https://www.ncbi.nlm.nih.gov/pubmed/33981820 http://dx.doi.org/10.1016/j.dib.2021.107041 |
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