Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community

The Oligo-Mouse-Microbiota (OMM(12)) gnotobiotic murine model is an increasingly popular model in microbiota studies. However, following Illumina and PacBio sequencing, the genomes of the 12 strains could not be closed. Here, we used genomic chromosome conformation capture (Hi-C) data to reorganize,...

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Autores principales: Lamy-Besnier, Quentin, Koszul, Romain, Debarbieux, Laurent, Marbouty, Martial
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086220/
https://www.ncbi.nlm.nih.gov/pubmed/33927045
http://dx.doi.org/10.1128/MRA.01396-20
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author Lamy-Besnier, Quentin
Koszul, Romain
Debarbieux, Laurent
Marbouty, Martial
author_facet Lamy-Besnier, Quentin
Koszul, Romain
Debarbieux, Laurent
Marbouty, Martial
author_sort Lamy-Besnier, Quentin
collection PubMed
description The Oligo-Mouse-Microbiota (OMM(12)) gnotobiotic murine model is an increasingly popular model in microbiota studies. However, following Illumina and PacBio sequencing, the genomes of the 12 strains could not be closed. Here, we used genomic chromosome conformation capture (Hi-C) data to reorganize, close, and improve the quality of these 12 genomes.
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spelling pubmed-80862202021-05-04 Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community Lamy-Besnier, Quentin Koszul, Romain Debarbieux, Laurent Marbouty, Martial Microbiol Resour Announc Genome Sequences The Oligo-Mouse-Microbiota (OMM(12)) gnotobiotic murine model is an increasingly popular model in microbiota studies. However, following Illumina and PacBio sequencing, the genomes of the 12 strains could not be closed. Here, we used genomic chromosome conformation capture (Hi-C) data to reorganize, close, and improve the quality of these 12 genomes. American Society for Microbiology 2021-04-29 /pmc/articles/PMC8086220/ /pubmed/33927045 http://dx.doi.org/10.1128/MRA.01396-20 Text en Copyright © 2021 Lamy-Besnier et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Lamy-Besnier, Quentin
Koszul, Romain
Debarbieux, Laurent
Marbouty, Martial
Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title_full Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title_fullStr Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title_full_unstemmed Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title_short Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
title_sort closed and high-quality bacterial genome sequences of the oligo-mouse-microbiota community
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086220/
https://www.ncbi.nlm.nih.gov/pubmed/33927045
http://dx.doi.org/10.1128/MRA.01396-20
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AT debarbieuxlaurent closedandhighqualitybacterialgenomesequencesoftheoligomousemicrobiotacommunity
AT marboutymartial closedandhighqualitybacterialgenomesequencesoftheoligomousemicrobiotacommunity

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