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Quasi-robust control of biochemical reaction networks via stochastic morphing
One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086924/ https://www.ncbi.nlm.nih.gov/pubmed/33849334 http://dx.doi.org/10.1098/rsif.2020.0985 |
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author | Plesa, Tomislav Stan, Guy-Bart Ouldridge, Thomas E. Bae, Wooli |
author_facet | Plesa, Tomislav Stan, Guy-Bart Ouldridge, Thomas E. Bae, Wooli |
author_sort | Plesa, Tomislav |
collection | PubMed |
description | One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated to factor in the intrinsic noise. In this context, biochemical controllers put forward in the literature have focused on manipulating the mean (first moment) and reducing the variance (second moment) of the target molecular species. However, many critical biochemical processes are realized via higher-order moments, particularly the number and configuration of the probability distribution modes (maxima). To bridge the gap, we put forward the stochastic morpher controller that can, under suitable timescale separations, morph the probability distribution of the target molecular species into a predefined form. The morphing can be performed at a lower-resolution, allowing one to achieve desired multi-modality/multi-stability, and at a higher-resolution, allowing one to achieve arbitrary probability distributions. Properties of the controller, such as robustness and convergence, are rigorously established, and demonstrated on various examples. Also proposed is a blueprint for an experimental implementation of stochastic morpher. |
format | Online Article Text |
id | pubmed-8086924 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80869242021-05-21 Quasi-robust control of biochemical reaction networks via stochastic morphing Plesa, Tomislav Stan, Guy-Bart Ouldridge, Thomas E. Bae, Wooli J R Soc Interface Life Sciences–Mathematics interface One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated to factor in the intrinsic noise. In this context, biochemical controllers put forward in the literature have focused on manipulating the mean (first moment) and reducing the variance (second moment) of the target molecular species. However, many critical biochemical processes are realized via higher-order moments, particularly the number and configuration of the probability distribution modes (maxima). To bridge the gap, we put forward the stochastic morpher controller that can, under suitable timescale separations, morph the probability distribution of the target molecular species into a predefined form. The morphing can be performed at a lower-resolution, allowing one to achieve desired multi-modality/multi-stability, and at a higher-resolution, allowing one to achieve arbitrary probability distributions. Properties of the controller, such as robustness and convergence, are rigorously established, and demonstrated on various examples. Also proposed is a blueprint for an experimental implementation of stochastic morpher. The Royal Society 2021-04-14 /pmc/articles/PMC8086924/ /pubmed/33849334 http://dx.doi.org/10.1098/rsif.2020.0985 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Plesa, Tomislav Stan, Guy-Bart Ouldridge, Thomas E. Bae, Wooli Quasi-robust control of biochemical reaction networks via stochastic morphing |
title | Quasi-robust control of biochemical reaction networks via stochastic morphing |
title_full | Quasi-robust control of biochemical reaction networks via stochastic morphing |
title_fullStr | Quasi-robust control of biochemical reaction networks via stochastic morphing |
title_full_unstemmed | Quasi-robust control of biochemical reaction networks via stochastic morphing |
title_short | Quasi-robust control of biochemical reaction networks via stochastic morphing |
title_sort | quasi-robust control of biochemical reaction networks via stochastic morphing |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086924/ https://www.ncbi.nlm.nih.gov/pubmed/33849334 http://dx.doi.org/10.1098/rsif.2020.0985 |
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