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Quasi-robust control of biochemical reaction networks via stochastic morphing

One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated...

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Autores principales: Plesa, Tomislav, Stan, Guy-Bart, Ouldridge, Thomas E., Bae, Wooli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086924/
https://www.ncbi.nlm.nih.gov/pubmed/33849334
http://dx.doi.org/10.1098/rsif.2020.0985
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author Plesa, Tomislav
Stan, Guy-Bart
Ouldridge, Thomas E.
Bae, Wooli
author_facet Plesa, Tomislav
Stan, Guy-Bart
Ouldridge, Thomas E.
Bae, Wooli
author_sort Plesa, Tomislav
collection PubMed
description One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated to factor in the intrinsic noise. In this context, biochemical controllers put forward in the literature have focused on manipulating the mean (first moment) and reducing the variance (second moment) of the target molecular species. However, many critical biochemical processes are realized via higher-order moments, particularly the number and configuration of the probability distribution modes (maxima). To bridge the gap, we put forward the stochastic morpher controller that can, under suitable timescale separations, morph the probability distribution of the target molecular species into a predefined form. The morphing can be performed at a lower-resolution, allowing one to achieve desired multi-modality/multi-stability, and at a higher-resolution, allowing one to achieve arbitrary probability distributions. Properties of the controller, such as robustness and convergence, are rigorously established, and demonstrated on various examples. Also proposed is a blueprint for an experimental implementation of stochastic morpher.
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spelling pubmed-80869242021-05-21 Quasi-robust control of biochemical reaction networks via stochastic morphing Plesa, Tomislav Stan, Guy-Bart Ouldridge, Thomas E. Bae, Wooli J R Soc Interface Life Sciences–Mathematics interface One of the main objectives of synthetic biology is the development of molecular controllers that can manipulate the dynamics of a given biochemical network that is at most partially known. When integrated into smaller compartments, such as living or synthetic cells, controllers have to be calibrated to factor in the intrinsic noise. In this context, biochemical controllers put forward in the literature have focused on manipulating the mean (first moment) and reducing the variance (second moment) of the target molecular species. However, many critical biochemical processes are realized via higher-order moments, particularly the number and configuration of the probability distribution modes (maxima). To bridge the gap, we put forward the stochastic morpher controller that can, under suitable timescale separations, morph the probability distribution of the target molecular species into a predefined form. The morphing can be performed at a lower-resolution, allowing one to achieve desired multi-modality/multi-stability, and at a higher-resolution, allowing one to achieve arbitrary probability distributions. Properties of the controller, such as robustness and convergence, are rigorously established, and demonstrated on various examples. Also proposed is a blueprint for an experimental implementation of stochastic morpher. The Royal Society 2021-04-14 /pmc/articles/PMC8086924/ /pubmed/33849334 http://dx.doi.org/10.1098/rsif.2020.0985 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Plesa, Tomislav
Stan, Guy-Bart
Ouldridge, Thomas E.
Bae, Wooli
Quasi-robust control of biochemical reaction networks via stochastic morphing
title Quasi-robust control of biochemical reaction networks via stochastic morphing
title_full Quasi-robust control of biochemical reaction networks via stochastic morphing
title_fullStr Quasi-robust control of biochemical reaction networks via stochastic morphing
title_full_unstemmed Quasi-robust control of biochemical reaction networks via stochastic morphing
title_short Quasi-robust control of biochemical reaction networks via stochastic morphing
title_sort quasi-robust control of biochemical reaction networks via stochastic morphing
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086924/
https://www.ncbi.nlm.nih.gov/pubmed/33849334
http://dx.doi.org/10.1098/rsif.2020.0985
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