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Opportunities and Challenges in Democratizing Immunology Datasets

The field of immunology is rapidly progressing toward a systems-level understanding of immunity to tackle complex infectious diseases, autoimmune conditions, cancer, and beyond. In the last couple of decades, advancements in data acquisition techniques have presented opportunities to explore untappe...

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Autores principales: Bhattacharya, Sanchita, Hu, Zicheng, Butte, Atul J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086961/
https://www.ncbi.nlm.nih.gov/pubmed/33936065
http://dx.doi.org/10.3389/fimmu.2021.647536
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author Bhattacharya, Sanchita
Hu, Zicheng
Butte, Atul J.
author_facet Bhattacharya, Sanchita
Hu, Zicheng
Butte, Atul J.
author_sort Bhattacharya, Sanchita
collection PubMed
description The field of immunology is rapidly progressing toward a systems-level understanding of immunity to tackle complex infectious diseases, autoimmune conditions, cancer, and beyond. In the last couple of decades, advancements in data acquisition techniques have presented opportunities to explore untapped areas of immunological research. Broad initiatives are launched to disseminate the datasets siloed in the global, federated, or private repositories, facilitating interoperability across various research domains. Concurrently, the application of computational methods, such as network analysis, meta-analysis, and machine learning have propelled the field forward by providing insight into salient features that influence the immunological response, which was otherwise left unexplored. Here, we review the opportunities and challenges in democratizing datasets, repositories, and community-wide knowledge sharing tools. We present use cases for repurposing open-access immunology datasets with advanced machine learning applications and more.
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spelling pubmed-80869612021-05-01 Opportunities and Challenges in Democratizing Immunology Datasets Bhattacharya, Sanchita Hu, Zicheng Butte, Atul J. Front Immunol Immunology The field of immunology is rapidly progressing toward a systems-level understanding of immunity to tackle complex infectious diseases, autoimmune conditions, cancer, and beyond. In the last couple of decades, advancements in data acquisition techniques have presented opportunities to explore untapped areas of immunological research. Broad initiatives are launched to disseminate the datasets siloed in the global, federated, or private repositories, facilitating interoperability across various research domains. Concurrently, the application of computational methods, such as network analysis, meta-analysis, and machine learning have propelled the field forward by providing insight into salient features that influence the immunological response, which was otherwise left unexplored. Here, we review the opportunities and challenges in democratizing datasets, repositories, and community-wide knowledge sharing tools. We present use cases for repurposing open-access immunology datasets with advanced machine learning applications and more. Frontiers Media S.A. 2021-04-16 /pmc/articles/PMC8086961/ /pubmed/33936065 http://dx.doi.org/10.3389/fimmu.2021.647536 Text en Copyright © 2021 Bhattacharya, Hu and Butte https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Bhattacharya, Sanchita
Hu, Zicheng
Butte, Atul J.
Opportunities and Challenges in Democratizing Immunology Datasets
title Opportunities and Challenges in Democratizing Immunology Datasets
title_full Opportunities and Challenges in Democratizing Immunology Datasets
title_fullStr Opportunities and Challenges in Democratizing Immunology Datasets
title_full_unstemmed Opportunities and Challenges in Democratizing Immunology Datasets
title_short Opportunities and Challenges in Democratizing Immunology Datasets
title_sort opportunities and challenges in democratizing immunology datasets
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8086961/
https://www.ncbi.nlm.nih.gov/pubmed/33936065
http://dx.doi.org/10.3389/fimmu.2021.647536
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