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Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer
BACKGROUND: Kindlin Family Members have been reported to be aberrantly expressed in various human cancer types and involved in tumorigenesis, tumor progression, and chemoresistance. However, their roles in non-small cell lung cancer (NSCLC) remain poorly elucidated. METHODS: We analyzed the prognost...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8091749/ https://www.ncbi.nlm.nih.gov/pubmed/33934696 http://dx.doi.org/10.1186/s12920-021-00967-2 |
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author | Su, Xiaoshan Liu, Ning Wu, Weijing Zhu, Zhixing Xu, Yuan He, Feng Chen, Xinfu Zeng, Yiming |
author_facet | Su, Xiaoshan Liu, Ning Wu, Weijing Zhu, Zhixing Xu, Yuan He, Feng Chen, Xinfu Zeng, Yiming |
author_sort | Su, Xiaoshan |
collection | PubMed |
description | BACKGROUND: Kindlin Family Members have been reported to be aberrantly expressed in various human cancer types and involved in tumorigenesis, tumor progression, and chemoresistance. However, their roles in non-small cell lung cancer (NSCLC) remain poorly elucidated. METHODS: We analyzed the prognostic value and immune infiltration of Kindlins in NSCLC through Oncomine, GEPIA, UALCAN, CCLE, Kaplan‑Meier plotter, cBioPortal, TIMER, GeneMANIA, STRING, and DAVID database. Additionally, the mRNA expression levels of Kindlins were verified in 30 paired NSCLC tissues and NSCLC cell lines by real-time PCR. RESULTS: The expression level of FERMT1 was remarkably increased in NSCLC tissues and NSCLC cell lines, while FERMT2 and FERMT3 were reduced. Kindlins expressions were associated with individual cancer stages and nodal metastasis. We also found that higher expression level of FERMT1 was obviously correlated with worse overall survival (OS) in patients with NSCLC, while higher FERMT2 was strongly associated with better overall survival (OS) and first progression (FP). Additionally, the expression of FERMT2 and FERMT3 were obviously correlated with the immune infiltration of diverse immune cells. Functional enrichment analysis has shown that Kindlins may be significantly correlated with intracellular signal transduction, ATP binding and the PI3K-Akt signaling pathway in NSCLC. CONCLUSIONS: The research provides a new perspective on the distinct roles of Kindlins in NSCLC and likely has important implications for future novel biomarkers and therapeutic targets in NSCLC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-021-00967-2. |
format | Online Article Text |
id | pubmed-8091749 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-80917492021-05-04 Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer Su, Xiaoshan Liu, Ning Wu, Weijing Zhu, Zhixing Xu, Yuan He, Feng Chen, Xinfu Zeng, Yiming BMC Med Genomics Research BACKGROUND: Kindlin Family Members have been reported to be aberrantly expressed in various human cancer types and involved in tumorigenesis, tumor progression, and chemoresistance. However, their roles in non-small cell lung cancer (NSCLC) remain poorly elucidated. METHODS: We analyzed the prognostic value and immune infiltration of Kindlins in NSCLC through Oncomine, GEPIA, UALCAN, CCLE, Kaplan‑Meier plotter, cBioPortal, TIMER, GeneMANIA, STRING, and DAVID database. Additionally, the mRNA expression levels of Kindlins were verified in 30 paired NSCLC tissues and NSCLC cell lines by real-time PCR. RESULTS: The expression level of FERMT1 was remarkably increased in NSCLC tissues and NSCLC cell lines, while FERMT2 and FERMT3 were reduced. Kindlins expressions were associated with individual cancer stages and nodal metastasis. We also found that higher expression level of FERMT1 was obviously correlated with worse overall survival (OS) in patients with NSCLC, while higher FERMT2 was strongly associated with better overall survival (OS) and first progression (FP). Additionally, the expression of FERMT2 and FERMT3 were obviously correlated with the immune infiltration of diverse immune cells. Functional enrichment analysis has shown that Kindlins may be significantly correlated with intracellular signal transduction, ATP binding and the PI3K-Akt signaling pathway in NSCLC. CONCLUSIONS: The research provides a new perspective on the distinct roles of Kindlins in NSCLC and likely has important implications for future novel biomarkers and therapeutic targets in NSCLC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-021-00967-2. BioMed Central 2021-05-02 /pmc/articles/PMC8091749/ /pubmed/33934696 http://dx.doi.org/10.1186/s12920-021-00967-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Su, Xiaoshan Liu, Ning Wu, Weijing Zhu, Zhixing Xu, Yuan He, Feng Chen, Xinfu Zeng, Yiming Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title | Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title_full | Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title_fullStr | Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title_full_unstemmed | Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title_short | Comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
title_sort | comprehensive analysis of prognostic value and immune infiltration of kindlin family members in non-small cell lung cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8091749/ https://www.ncbi.nlm.nih.gov/pubmed/33934696 http://dx.doi.org/10.1186/s12920-021-00967-2 |
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