Cargando…

The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes

Novel coronavirus SARS-CoV-2 was recently outbreak worldwide causes severe acute respiratory syndrome along with gastrointestinal symptoms for some infected patients. Information on detail pathogenesis, host immune responses and responsible biological pathways are limited. Therefore, infection speci...

Descripción completa

Detalles Bibliográficos
Autores principales: Nayak, Tilak, De, Debjit, Dhal, Paltu Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8091811/
https://www.ncbi.nlm.nih.gov/pubmed/33957338
http://dx.doi.org/10.1016/j.meegid.2021.104892
_version_ 1783687553593901056
author Nayak, Tilak
De, Debjit
Dhal, Paltu Kumar
author_facet Nayak, Tilak
De, Debjit
Dhal, Paltu Kumar
author_sort Nayak, Tilak
collection PubMed
description Novel coronavirus SARS-CoV-2 was recently outbreak worldwide causes severe acute respiratory syndrome along with gastrointestinal symptoms for some infected patients. Information on detail pathogenesis, host immune responses and responsible biological pathways are limited. Therefore, infection specific host gut responses and dietary supplements to neutralize immune inflammation demand extensive research. This study aimed to find differences in global co-expression protein-protein interaction sub-network and enriched biological processes in SARS-CoV and SARS-CoV-2 infected gut enterocytes cell line. Attempts have also been made to predict some dietary supplements to boost human health. The SARS-CoV and SARS-CoV-2 infected differential express proteins were integrated with the human protein interaction network and co-expression subnetworks were constructed. Common hubs of these sub-networks reshape central cellular pathways of metabolic processes, lipid localization, hypoxia response to decrease oxygen level and transport of bio-molecules. The major biological process enriched in the unique hub of SARS-CoV-2 significantly differ from SARS-CoV, related to interferon signaling, regulation of viral process and influenza-A enzymatic pathway. Predicted dietary supplements can improve SARS-CoV-2 infected person’'s health by boosting the host immunity/reducing inflammation. To the best of our knowledge this is the first report on co-expression network mediated biological process in human gut enterocytes to predict dietary supplements/compounds.
format Online
Article
Text
id pubmed-8091811
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier B.V.
record_format MEDLINE/PubMed
spelling pubmed-80918112021-05-03 The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes Nayak, Tilak De, Debjit Dhal, Paltu Kumar Infect Genet Evol Research Paper Novel coronavirus SARS-CoV-2 was recently outbreak worldwide causes severe acute respiratory syndrome along with gastrointestinal symptoms for some infected patients. Information on detail pathogenesis, host immune responses and responsible biological pathways are limited. Therefore, infection specific host gut responses and dietary supplements to neutralize immune inflammation demand extensive research. This study aimed to find differences in global co-expression protein-protein interaction sub-network and enriched biological processes in SARS-CoV and SARS-CoV-2 infected gut enterocytes cell line. Attempts have also been made to predict some dietary supplements to boost human health. The SARS-CoV and SARS-CoV-2 infected differential express proteins were integrated with the human protein interaction network and co-expression subnetworks were constructed. Common hubs of these sub-networks reshape central cellular pathways of metabolic processes, lipid localization, hypoxia response to decrease oxygen level and transport of bio-molecules. The major biological process enriched in the unique hub of SARS-CoV-2 significantly differ from SARS-CoV, related to interferon signaling, regulation of viral process and influenza-A enzymatic pathway. Predicted dietary supplements can improve SARS-CoV-2 infected person’'s health by boosting the host immunity/reducing inflammation. To the best of our knowledge this is the first report on co-expression network mediated biological process in human gut enterocytes to predict dietary supplements/compounds. Elsevier B.V. 2021-08 2021-05-03 /pmc/articles/PMC8091811/ /pubmed/33957338 http://dx.doi.org/10.1016/j.meegid.2021.104892 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Research Paper
Nayak, Tilak
De, Debjit
Dhal, Paltu Kumar
The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title_full The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title_fullStr The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title_full_unstemmed The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title_short The differences in SARS-CoV and SARS-CoV-2 specific co-expression network mediated biological process in human gut enterocytes
title_sort differences in sars-cov and sars-cov-2 specific co-expression network mediated biological process in human gut enterocytes
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8091811/
https://www.ncbi.nlm.nih.gov/pubmed/33957338
http://dx.doi.org/10.1016/j.meegid.2021.104892
work_keys_str_mv AT nayaktilak thedifferencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes
AT dedebjit thedifferencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes
AT dhalpaltukumar thedifferencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes
AT nayaktilak differencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes
AT dedebjit differencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes
AT dhalpaltukumar differencesinsarscovandsarscov2specificcoexpressionnetworkmediatedbiologicalprocessinhumangutenterocytes