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Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach

COVID-19 pandemic defined a worldwide health crisis into a humanitarian crisis. Amid this global emergency, human civilization is under enormous strain since no proper therapeutic method is discovered yet. A wave of research effort has been put toward the invention of therapeutics and vaccines again...

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Autores principales: Ghosh, Moumita, Sil, Pritam, Roy, Anirban, Fajriyah, Rohmatul, Mondal, Kartick Chandra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer India 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8093916/
http://dx.doi.org/10.1007/s40031-021-00569-7
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author Ghosh, Moumita
Sil, Pritam
Roy, Anirban
Fajriyah, Rohmatul
Mondal, Kartick Chandra
author_facet Ghosh, Moumita
Sil, Pritam
Roy, Anirban
Fajriyah, Rohmatul
Mondal, Kartick Chandra
author_sort Ghosh, Moumita
collection PubMed
description COVID-19 pandemic defined a worldwide health crisis into a humanitarian crisis. Amid this global emergency, human civilization is under enormous strain since no proper therapeutic method is discovered yet. A wave of research effort has been put toward the invention of therapeutics and vaccines against COVID-19. Contrarily, the spread of this fatal virus has already infected millions of people and claimed many lives all over the world. Computational biology can attempt to understand the protein–protein interactions between the viral protein and host protein. Therefore, potential viral–host protein interactions can be identified which is known as crucial information toward the discovery of drugs. In this study, an approach was presented for predicting novel interactions from maximal biclusters. Additionally, the predicted interactions are verified from biological perspectives. For this, a study was conducted on the gene ontology and KEGG-pathway in relation to the newly predicted interactions.
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spelling pubmed-80939162021-05-05 Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach Ghosh, Moumita Sil, Pritam Roy, Anirban Fajriyah, Rohmatul Mondal, Kartick Chandra J. Inst. Eng. India Ser. B Case Study COVID-19 pandemic defined a worldwide health crisis into a humanitarian crisis. Amid this global emergency, human civilization is under enormous strain since no proper therapeutic method is discovered yet. A wave of research effort has been put toward the invention of therapeutics and vaccines against COVID-19. Contrarily, the spread of this fatal virus has already infected millions of people and claimed many lives all over the world. Computational biology can attempt to understand the protein–protein interactions between the viral protein and host protein. Therefore, potential viral–host protein interactions can be identified which is known as crucial information toward the discovery of drugs. In this study, an approach was presented for predicting novel interactions from maximal biclusters. Additionally, the predicted interactions are verified from biological perspectives. For this, a study was conducted on the gene ontology and KEGG-pathway in relation to the newly predicted interactions. Springer India 2021-05-04 2021 /pmc/articles/PMC8093916/ http://dx.doi.org/10.1007/s40031-021-00569-7 Text en © The Institution of Engineers (India) 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Case Study
Ghosh, Moumita
Sil, Pritam
Roy, Anirban
Fajriyah, Rohmatul
Mondal, Kartick Chandra
Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title_full Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title_fullStr Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title_full_unstemmed Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title_short Finding Prediction of Interaction Between SARS-CoV-2 and Human Protein: A Data-Driven Approach
title_sort finding prediction of interaction between sars-cov-2 and human protein: a data-driven approach
topic Case Study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8093916/
http://dx.doi.org/10.1007/s40031-021-00569-7
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