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Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images

Breast cancer (BC) is one of the most common types of cancer that affects females worldwide. It may lead to irreversible complications and even death due to late diagnosis and treatment. The pathological analysis is considered the gold standard for BC detection, but it is a challenging task. Automat...

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Autores principales: Attallah, Omneya, Anwar, Fatma, Ghanem, Nagia M., Ismail, Mohamed A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8093954/
https://www.ncbi.nlm.nih.gov/pubmed/33987459
http://dx.doi.org/10.7717/peerj-cs.493
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author Attallah, Omneya
Anwar, Fatma
Ghanem, Nagia M.
Ismail, Mohamed A.
author_facet Attallah, Omneya
Anwar, Fatma
Ghanem, Nagia M.
Ismail, Mohamed A.
author_sort Attallah, Omneya
collection PubMed
description Breast cancer (BC) is one of the most common types of cancer that affects females worldwide. It may lead to irreversible complications and even death due to late diagnosis and treatment. The pathological analysis is considered the gold standard for BC detection, but it is a challenging task. Automatic diagnosis of BC could reduce death rates, by creating a computer aided diagnosis (CADx) system capable of accurately identifying BC at an early stage and decreasing the time consumed by pathologists during examinations. This paper proposes a novel CADx system named Histo-CADx for the automatic diagnosis of BC. Most related studies were based on individual deep learning methods. Also, studies did not examine the influence of fusing features from multiple CNNs and handcrafted features. In addition, related studies did not investigate the best combination of fused features that influence the performance of the CADx. Therefore, Histo-CADx is based on two stages of fusion. The first fusion stage involves the investigation of the impact of fusing several deep learning (DL) techniques with handcrafted feature extraction methods using the auto-encoder DL method. This stage also examines and searches for a suitable set of fused features that could improve the performance of Histo-CADx. The second fusion stage constructs a multiple classifier system (MCS) for fusing outputs from three classifiers, to further improve the accuracy of the proposed Histo-CADx. The performance of Histo-CADx is evaluated using two public datasets; specifically, the BreakHis and the ICIAR 2018 datasets. The results from the analysis of both datasets verified that the two fusion stages of Histo-CADx successfully improved the accuracy of the CADx compared to CADx constructed with individual features. Furthermore, using the auto-encoder for the fusion process has reduced the computation cost of the system. Moreover, the results after the two fusion stages confirmed that Histo-CADx is reliable and has the capacity of classifying BC more accurately compared to other latest studies. Consequently, it can be used by pathologists to help them in the accurate diagnosis of BC. In addition, it can decrease the time and effort needed by medical experts during the examination.
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spelling pubmed-80939542021-05-12 Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images Attallah, Omneya Anwar, Fatma Ghanem, Nagia M. Ismail, Mohamed A. PeerJ Comput Sci Bioinformatics Breast cancer (BC) is one of the most common types of cancer that affects females worldwide. It may lead to irreversible complications and even death due to late diagnosis and treatment. The pathological analysis is considered the gold standard for BC detection, but it is a challenging task. Automatic diagnosis of BC could reduce death rates, by creating a computer aided diagnosis (CADx) system capable of accurately identifying BC at an early stage and decreasing the time consumed by pathologists during examinations. This paper proposes a novel CADx system named Histo-CADx for the automatic diagnosis of BC. Most related studies were based on individual deep learning methods. Also, studies did not examine the influence of fusing features from multiple CNNs and handcrafted features. In addition, related studies did not investigate the best combination of fused features that influence the performance of the CADx. Therefore, Histo-CADx is based on two stages of fusion. The first fusion stage involves the investigation of the impact of fusing several deep learning (DL) techniques with handcrafted feature extraction methods using the auto-encoder DL method. This stage also examines and searches for a suitable set of fused features that could improve the performance of Histo-CADx. The second fusion stage constructs a multiple classifier system (MCS) for fusing outputs from three classifiers, to further improve the accuracy of the proposed Histo-CADx. The performance of Histo-CADx is evaluated using two public datasets; specifically, the BreakHis and the ICIAR 2018 datasets. The results from the analysis of both datasets verified that the two fusion stages of Histo-CADx successfully improved the accuracy of the CADx compared to CADx constructed with individual features. Furthermore, using the auto-encoder for the fusion process has reduced the computation cost of the system. Moreover, the results after the two fusion stages confirmed that Histo-CADx is reliable and has the capacity of classifying BC more accurately compared to other latest studies. Consequently, it can be used by pathologists to help them in the accurate diagnosis of BC. In addition, it can decrease the time and effort needed by medical experts during the examination. PeerJ Inc. 2021-04-27 /pmc/articles/PMC8093954/ /pubmed/33987459 http://dx.doi.org/10.7717/peerj-cs.493 Text en © 2021 Attallah et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Attallah, Omneya
Anwar, Fatma
Ghanem, Nagia M.
Ismail, Mohamed A.
Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title_full Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title_fullStr Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title_full_unstemmed Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title_short Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
title_sort histo-cadx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8093954/
https://www.ncbi.nlm.nih.gov/pubmed/33987459
http://dx.doi.org/10.7717/peerj-cs.493
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AT ghanemnagiam histocadxduocascadedfusionstagesforbreastcancerdiagnosisfromhistopathologicalimages
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