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2-step deep learning model for landmarks localization in spine radiographs
In this work we propose to use Deep Learning to automatically calculate the coordinates of the vertebral corners in sagittal x-rays images of the thoracolumbar spine and, from those landmarks, to calculate relevant radiological parameters such as L1–L5 and L1–S1 lordosis and sacral slope. For this p...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8096829/ https://www.ncbi.nlm.nih.gov/pubmed/33947917 http://dx.doi.org/10.1038/s41598-021-89102-w |
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author | Cina, Andrea Bassani, Tito Panico, Matteo Luca, Andrea Masharawi, Youssef Brayda-Bruno, Marco Galbusera, Fabio |
author_facet | Cina, Andrea Bassani, Tito Panico, Matteo Luca, Andrea Masharawi, Youssef Brayda-Bruno, Marco Galbusera, Fabio |
author_sort | Cina, Andrea |
collection | PubMed |
description | In this work we propose to use Deep Learning to automatically calculate the coordinates of the vertebral corners in sagittal x-rays images of the thoracolumbar spine and, from those landmarks, to calculate relevant radiological parameters such as L1–L5 and L1–S1 lordosis and sacral slope. For this purpose, we used 10,193 images annotated with the landmarks coordinates as the ground truth. We realized a model that consists of 2 steps. In step 1, we trained 2 Convolutional Neural Networks to identify each vertebra in the image and calculate the landmarks coordinates respectively. In step 2, we refined the localization using cropped images of a single vertebra as input to another convolutional neural network and we used geometrical transformations to map the corners to the original image. For the localization tasks, we used a differentiable spatial to numerical transform (DSNT) as the top layer. We evaluated the model both qualitatively and quantitatively on a set of 195 test images. The median localization errors relative to the vertebrae dimensions were 1.98% and 1.68% for x and y coordinates respectively. All the predicted angles were highly correlated with the ground truth, despite non-negligible absolute median errors of 1.84°, 2.43° and 1.98° for L1–L5, L1–S1 and SS respectively. Our model is able to calculate with good accuracy the coordinates of the vertebral corners and has a large potential for improving the reliability and repeatability of measurements in clinical tasks. |
format | Online Article Text |
id | pubmed-8096829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80968292021-05-05 2-step deep learning model for landmarks localization in spine radiographs Cina, Andrea Bassani, Tito Panico, Matteo Luca, Andrea Masharawi, Youssef Brayda-Bruno, Marco Galbusera, Fabio Sci Rep Article In this work we propose to use Deep Learning to automatically calculate the coordinates of the vertebral corners in sagittal x-rays images of the thoracolumbar spine and, from those landmarks, to calculate relevant radiological parameters such as L1–L5 and L1–S1 lordosis and sacral slope. For this purpose, we used 10,193 images annotated with the landmarks coordinates as the ground truth. We realized a model that consists of 2 steps. In step 1, we trained 2 Convolutional Neural Networks to identify each vertebra in the image and calculate the landmarks coordinates respectively. In step 2, we refined the localization using cropped images of a single vertebra as input to another convolutional neural network and we used geometrical transformations to map the corners to the original image. For the localization tasks, we used a differentiable spatial to numerical transform (DSNT) as the top layer. We evaluated the model both qualitatively and quantitatively on a set of 195 test images. The median localization errors relative to the vertebrae dimensions were 1.98% and 1.68% for x and y coordinates respectively. All the predicted angles were highly correlated with the ground truth, despite non-negligible absolute median errors of 1.84°, 2.43° and 1.98° for L1–L5, L1–S1 and SS respectively. Our model is able to calculate with good accuracy the coordinates of the vertebral corners and has a large potential for improving the reliability and repeatability of measurements in clinical tasks. Nature Publishing Group UK 2021-05-04 /pmc/articles/PMC8096829/ /pubmed/33947917 http://dx.doi.org/10.1038/s41598-021-89102-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Cina, Andrea Bassani, Tito Panico, Matteo Luca, Andrea Masharawi, Youssef Brayda-Bruno, Marco Galbusera, Fabio 2-step deep learning model for landmarks localization in spine radiographs |
title | 2-step deep learning model for landmarks localization in spine radiographs |
title_full | 2-step deep learning model for landmarks localization in spine radiographs |
title_fullStr | 2-step deep learning model for landmarks localization in spine radiographs |
title_full_unstemmed | 2-step deep learning model for landmarks localization in spine radiographs |
title_short | 2-step deep learning model for landmarks localization in spine radiographs |
title_sort | 2-step deep learning model for landmarks localization in spine radiographs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8096829/ https://www.ncbi.nlm.nih.gov/pubmed/33947917 http://dx.doi.org/10.1038/s41598-021-89102-w |
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