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Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population

During range expansion, edge populations are expected to face increased genetic drift, which in turn can alter and potentially compromise adaptive dynamics, preventing the removal of deleterious mutations and slowing down adaptation. Here, we contrast populations of the European subspecies Arabidops...

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Autores principales: Takou, Margarita, Hämälä, Tuomas, Koch, Evan M, Steige, Kim A, Dittberner, Hannes, Yant, Levi, Genete, Mathieu, Sunyaev, Shamil, Castric, Vincent, Vekemans, Xavier, Savolainen, Outi, de Meaux, Juliette
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8097302/
https://www.ncbi.nlm.nih.gov/pubmed/33480994
http://dx.doi.org/10.1093/molbev/msaa322
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author Takou, Margarita
Hämälä, Tuomas
Koch, Evan M
Steige, Kim A
Dittberner, Hannes
Yant, Levi
Genete, Mathieu
Sunyaev, Shamil
Castric, Vincent
Vekemans, Xavier
Savolainen, Outi
de Meaux, Juliette
author_facet Takou, Margarita
Hämälä, Tuomas
Koch, Evan M
Steige, Kim A
Dittberner, Hannes
Yant, Levi
Genete, Mathieu
Sunyaev, Shamil
Castric, Vincent
Vekemans, Xavier
Savolainen, Outi
de Meaux, Juliette
author_sort Takou, Margarita
collection PubMed
description During range expansion, edge populations are expected to face increased genetic drift, which in turn can alter and potentially compromise adaptive dynamics, preventing the removal of deleterious mutations and slowing down adaptation. Here, we contrast populations of the European subspecies Arabidopsis lyrata ssp. petraea, which expanded its Northern range after the last glaciation. We document a sharp decline in effective population size in the range-edge population and observe that nonsynonymous variants segregate at higher frequencies. We detect a 4.9% excess of derived nonsynonymous variants per individual in the range-edge population, suggesting an increase of the genomic burden of deleterious mutations. Inference of the fitness effects of mutations and modeling of allele frequencies under the explicit demographic history of each population predicts a depletion of rare deleterious variants in the range-edge population, but an enrichment for fixed ones, consistent with the bottleneck effect. However, the demographic history of the range-edge population predicts a small net decrease in per-individual fitness. Consistent with this prediction, the range-edge population is not impaired in its growth and survival measured in a common garden experiment. We further observe that the allelic diversity at the self-incompatibility locus, which ensures strict outcrossing and evolves under negative frequency-dependent selection, has remained unchanged. Genomic footprints indicative of selective sweeps are broader in the Northern population but not less frequent. We conclude that the outcrossing species A. lyrata ssp. petraea shows a strong resilience to the effect of range expansion.
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spelling pubmed-80973022021-05-10 Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population Takou, Margarita Hämälä, Tuomas Koch, Evan M Steige, Kim A Dittberner, Hannes Yant, Levi Genete, Mathieu Sunyaev, Shamil Castric, Vincent Vekemans, Xavier Savolainen, Outi de Meaux, Juliette Mol Biol Evol Discoveries During range expansion, edge populations are expected to face increased genetic drift, which in turn can alter and potentially compromise adaptive dynamics, preventing the removal of deleterious mutations and slowing down adaptation. Here, we contrast populations of the European subspecies Arabidopsis lyrata ssp. petraea, which expanded its Northern range after the last glaciation. We document a sharp decline in effective population size in the range-edge population and observe that nonsynonymous variants segregate at higher frequencies. We detect a 4.9% excess of derived nonsynonymous variants per individual in the range-edge population, suggesting an increase of the genomic burden of deleterious mutations. Inference of the fitness effects of mutations and modeling of allele frequencies under the explicit demographic history of each population predicts a depletion of rare deleterious variants in the range-edge population, but an enrichment for fixed ones, consistent with the bottleneck effect. However, the demographic history of the range-edge population predicts a small net decrease in per-individual fitness. Consistent with this prediction, the range-edge population is not impaired in its growth and survival measured in a common garden experiment. We further observe that the allelic diversity at the self-incompatibility locus, which ensures strict outcrossing and evolves under negative frequency-dependent selection, has remained unchanged. Genomic footprints indicative of selective sweeps are broader in the Northern population but not less frequent. We conclude that the outcrossing species A. lyrata ssp. petraea shows a strong resilience to the effect of range expansion. Oxford University Press 2021-01-22 /pmc/articles/PMC8097302/ /pubmed/33480994 http://dx.doi.org/10.1093/molbev/msaa322 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Discoveries
Takou, Margarita
Hämälä, Tuomas
Koch, Evan M
Steige, Kim A
Dittberner, Hannes
Yant, Levi
Genete, Mathieu
Sunyaev, Shamil
Castric, Vincent
Vekemans, Xavier
Savolainen, Outi
de Meaux, Juliette
Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title_full Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title_fullStr Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title_full_unstemmed Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title_short Maintenance of Adaptive Dynamics and No Detectable Load in a Range-Edge Outcrossing Plant Population
title_sort maintenance of adaptive dynamics and no detectable load in a range-edge outcrossing plant population
topic Discoveries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8097302/
https://www.ncbi.nlm.nih.gov/pubmed/33480994
http://dx.doi.org/10.1093/molbev/msaa322
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