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Uncovering and classifying the role of driven nodes in control of complex networks

The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain comple...

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Autores principales: Shinzawa, Yuma, Akutsu, Tatsuya, Nacher, Jose C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100151/
https://www.ncbi.nlm.nih.gov/pubmed/33953235
http://dx.doi.org/10.1038/s41598-021-88295-4
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author Shinzawa, Yuma
Akutsu, Tatsuya
Nacher, Jose C.
author_facet Shinzawa, Yuma
Akutsu, Tatsuya
Nacher, Jose C.
author_sort Shinzawa, Yuma
collection PubMed
description The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain complex networks. A recent work introduced a constraint that one driver node can control one target node, and proposed a method to identify the minimum target nodes set under such a constraint. We refer such target nodes to driven nodes. However, the driven nodes may not be uniquely determined. Here, we develop a novel algorithm to classify driven nodes in control categories. Our computational analysis on a large number of biological networks indicates that the number of driven nodes is considerably larger than the number of driver nodes, not only in all examined complete plant metabolic networks but also in several key human pathways, which firstly demonstrate the importance of use of driven nodes in analysis of real-world networks.
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spelling pubmed-81001512021-05-07 Uncovering and classifying the role of driven nodes in control of complex networks Shinzawa, Yuma Akutsu, Tatsuya Nacher, Jose C. Sci Rep Article The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain complex networks. A recent work introduced a constraint that one driver node can control one target node, and proposed a method to identify the minimum target nodes set under such a constraint. We refer such target nodes to driven nodes. However, the driven nodes may not be uniquely determined. Here, we develop a novel algorithm to classify driven nodes in control categories. Our computational analysis on a large number of biological networks indicates that the number of driven nodes is considerably larger than the number of driver nodes, not only in all examined complete plant metabolic networks but also in several key human pathways, which firstly demonstrate the importance of use of driven nodes in analysis of real-world networks. Nature Publishing Group UK 2021-05-05 /pmc/articles/PMC8100151/ /pubmed/33953235 http://dx.doi.org/10.1038/s41598-021-88295-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shinzawa, Yuma
Akutsu, Tatsuya
Nacher, Jose C.
Uncovering and classifying the role of driven nodes in control of complex networks
title Uncovering and classifying the role of driven nodes in control of complex networks
title_full Uncovering and classifying the role of driven nodes in control of complex networks
title_fullStr Uncovering and classifying the role of driven nodes in control of complex networks
title_full_unstemmed Uncovering and classifying the role of driven nodes in control of complex networks
title_short Uncovering and classifying the role of driven nodes in control of complex networks
title_sort uncovering and classifying the role of driven nodes in control of complex networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100151/
https://www.ncbi.nlm.nih.gov/pubmed/33953235
http://dx.doi.org/10.1038/s41598-021-88295-4
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