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Uncovering and classifying the role of driven nodes in control of complex networks
The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain comple...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100151/ https://www.ncbi.nlm.nih.gov/pubmed/33953235 http://dx.doi.org/10.1038/s41598-021-88295-4 |
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author | Shinzawa, Yuma Akutsu, Tatsuya Nacher, Jose C. |
author_facet | Shinzawa, Yuma Akutsu, Tatsuya Nacher, Jose C. |
author_sort | Shinzawa, Yuma |
collection | PubMed |
description | The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain complex networks. A recent work introduced a constraint that one driver node can control one target node, and proposed a method to identify the minimum target nodes set under such a constraint. We refer such target nodes to driven nodes. However, the driven nodes may not be uniquely determined. Here, we develop a novel algorithm to classify driven nodes in control categories. Our computational analysis on a large number of biological networks indicates that the number of driven nodes is considerably larger than the number of driver nodes, not only in all examined complete plant metabolic networks but also in several key human pathways, which firstly demonstrate the importance of use of driven nodes in analysis of real-world networks. |
format | Online Article Text |
id | pubmed-8100151 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81001512021-05-07 Uncovering and classifying the role of driven nodes in control of complex networks Shinzawa, Yuma Akutsu, Tatsuya Nacher, Jose C. Sci Rep Article The widely used Maximum Matching (MM) method identifies the minimum driver nodes set to control biological and technological systems. Nevertheless, it is assumed in the MM approach that one driver node can send control signal to multiple target nodes, which might not be appropriate in certain complex networks. A recent work introduced a constraint that one driver node can control one target node, and proposed a method to identify the minimum target nodes set under such a constraint. We refer such target nodes to driven nodes. However, the driven nodes may not be uniquely determined. Here, we develop a novel algorithm to classify driven nodes in control categories. Our computational analysis on a large number of biological networks indicates that the number of driven nodes is considerably larger than the number of driver nodes, not only in all examined complete plant metabolic networks but also in several key human pathways, which firstly demonstrate the importance of use of driven nodes in analysis of real-world networks. Nature Publishing Group UK 2021-05-05 /pmc/articles/PMC8100151/ /pubmed/33953235 http://dx.doi.org/10.1038/s41598-021-88295-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Shinzawa, Yuma Akutsu, Tatsuya Nacher, Jose C. Uncovering and classifying the role of driven nodes in control of complex networks |
title | Uncovering and classifying the role of driven nodes in control of complex networks |
title_full | Uncovering and classifying the role of driven nodes in control of complex networks |
title_fullStr | Uncovering and classifying the role of driven nodes in control of complex networks |
title_full_unstemmed | Uncovering and classifying the role of driven nodes in control of complex networks |
title_short | Uncovering and classifying the role of driven nodes in control of complex networks |
title_sort | uncovering and classifying the role of driven nodes in control of complex networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100151/ https://www.ncbi.nlm.nih.gov/pubmed/33953235 http://dx.doi.org/10.1038/s41598-021-88295-4 |
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