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A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity

Development has intrigued humanity since ancient times. Today, the main paradigm in developmental biology and evolutionary developmental biology (evo-devo) is the genetic program, in which development is explained by the interplay and interaction of genes, that is, by the action of gene regulatory n...

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Autor principal: Ostachuk, Agustín
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100167/
https://www.ncbi.nlm.nih.gov/pubmed/33953251
http://dx.doi.org/10.1038/s41598-021-88662-1
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author Ostachuk, Agustín
author_facet Ostachuk, Agustín
author_sort Ostachuk, Agustín
collection PubMed
description Development has intrigued humanity since ancient times. Today, the main paradigm in developmental biology and evolutionary developmental biology (evo-devo) is the genetic program, in which development is explained by the interplay and interaction of genes, that is, by the action of gene regulatory networks (GRNs). However, it is not even clear that a GRN, no matter how complex, can be translated into a form. Therefore, the fundamental enigma of development still remains: how is a complex organism formed from a single cell? This question unfolded the historical drama and the dialectical tension between preformation and epigenesis. In order to shed light on these issues, I studied the development of crabs (infraorder Brachyura), as representative of the subphylum Crustacea, using network theory. The external morphology of the different phases of brachyuran metamorphosis were modeled as networks and their main characteristics analyzed. As one could expect, the parameters usually regarded as indicative of network complexity, such as modularity and hierarchy, increased during development. However, when more sophisticated complexity measures were tested, it was evidenced that whereas a group of complexity measures increased during development, another group decreased. This led to consider that two kinds of complexities were being measured. I called them intensive and extensive complexity. In view of these results, I propose that crab development involves a passage from an intensive to an extensive complexity. In other words, crab development can be interpreted as a process of unfolding of an intensive, preexistent complexity.
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spelling pubmed-81001672021-05-07 A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity Ostachuk, Agustín Sci Rep Article Development has intrigued humanity since ancient times. Today, the main paradigm in developmental biology and evolutionary developmental biology (evo-devo) is the genetic program, in which development is explained by the interplay and interaction of genes, that is, by the action of gene regulatory networks (GRNs). However, it is not even clear that a GRN, no matter how complex, can be translated into a form. Therefore, the fundamental enigma of development still remains: how is a complex organism formed from a single cell? This question unfolded the historical drama and the dialectical tension between preformation and epigenesis. In order to shed light on these issues, I studied the development of crabs (infraorder Brachyura), as representative of the subphylum Crustacea, using network theory. The external morphology of the different phases of brachyuran metamorphosis were modeled as networks and their main characteristics analyzed. As one could expect, the parameters usually regarded as indicative of network complexity, such as modularity and hierarchy, increased during development. However, when more sophisticated complexity measures were tested, it was evidenced that whereas a group of complexity measures increased during development, another group decreased. This led to consider that two kinds of complexities were being measured. I called them intensive and extensive complexity. In view of these results, I propose that crab development involves a passage from an intensive to an extensive complexity. In other words, crab development can be interpreted as a process of unfolding of an intensive, preexistent complexity. Nature Publishing Group UK 2021-05-05 /pmc/articles/PMC8100167/ /pubmed/33953251 http://dx.doi.org/10.1038/s41598-021-88662-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ostachuk, Agustín
A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title_full A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title_fullStr A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title_full_unstemmed A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title_short A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
title_sort network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100167/
https://www.ncbi.nlm.nih.gov/pubmed/33953251
http://dx.doi.org/10.1038/s41598-021-88662-1
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