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Regression plane concept for analysing continuous cellular processes with machine learning

Biological processes are inherently continuous, and the chance of phenotypic discovery is significantly restricted by discretising them. Using multi-parametric active regression we introduce the Regression Plane (RP), a user-friendly discovery tool enabling class-free phenotypic supervised machine l...

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Detalles Bibliográficos
Autores principales: Szkalisity, Abel, Piccinini, Filippo, Beleon, Attila, Balassa, Tamas, Varga, Istvan Gergely, Migh, Ede, Molnar, Csaba, Paavolainen, Lassi, Timonen, Sanna, Banerjee, Indranil, Ikonen, Elina, Yamauchi, Yohei, Ando, Istvan, Peltonen, Jaakko, Pietiäinen, Vilja, Honti, Viktor, Horvath, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100172/
https://www.ncbi.nlm.nih.gov/pubmed/33953203
http://dx.doi.org/10.1038/s41467-021-22866-x
Descripción
Sumario:Biological processes are inherently continuous, and the chance of phenotypic discovery is significantly restricted by discretising them. Using multi-parametric active regression we introduce the Regression Plane (RP), a user-friendly discovery tool enabling class-free phenotypic supervised machine learning, to describe and explore biological data in a continuous manner. First, we compare traditional classification with regression in a simulated experimental setup. Second, we use our framework to identify genes involved in regulating triglyceride levels in human cells. Subsequently, we analyse a time-lapse dataset on mitosis to demonstrate that the proposed methodology is capable of modelling complex processes at infinite resolution. Finally, we show that hemocyte differentiation in Drosophila melanogaster has continuous characteristics.