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The crystal structures of three disordered 2-substituted benzimidazole esters
The crystal structures of three benzimidazole esters containing aryl or heterocyclic substituents at position 2 are reported, and all three exhibit disorder of molecular entities. In ethyl 1-methyl-2-[4-(prop-2-ynoxy)phenyl]-1H-benzimidazole-5-carboxylate, C(20)H(18)N(2)O(3), (I), the prop-2-yn-...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100276/ https://www.ncbi.nlm.nih.gov/pubmed/34026249 http://dx.doi.org/10.1107/S2056989021003364 |
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author | Harish Chinthal, Chayanna Yathirajan, Hemmige S. Manju, Nagaraja Kalluraya, Balakrishna Foro, Sabine Glidewell, Christopher |
author_facet | Harish Chinthal, Chayanna Yathirajan, Hemmige S. Manju, Nagaraja Kalluraya, Balakrishna Foro, Sabine Glidewell, Christopher |
author_sort | Harish Chinthal, Chayanna |
collection | PubMed |
description | The crystal structures of three benzimidazole esters containing aryl or heterocyclic substituents at position 2 are reported, and all three exhibit disorder of molecular entities. In ethyl 1-methyl-2-[4-(prop-2-ynoxy)phenyl]-1H-benzimidazole-5-carboxylate, C(20)H(18)N(2)O(3), (I), the prop-2-yn-1-oxyphenyl unit is disordered over two sets of atomic sites having effectively equal occupancies, 0.506 (5) and 0.494 (5). The propyl substituent in ethyl 1-propyl-2-(pyren-1-yl)-1H-benzimidazole-5-carboxylate, C(29)H(24)N(2)O(2), (II), is disordered over two sets of atomic sites having occupancies 0.601 (8) and 0.399 (8), and the ester unit in ethyl 1-methyl-2-(5-chloro-3-methyl-1-phenyl-1H-pyrazol-4-yl)-1H-benzimidazole-5-carboxylate, C(21)H(19)ClN(4)O(2) (III), is disordered over two sets of atomic sites having occupancies 0.645 (7) and 0.355 (7). In each of the C—H⋯π(arene) hydrogen bonds in (I), the donor and acceptor form parts of different disorder components, so that no continuous aggregation is possible. The molecules of (II) are linked by a single C—H⋯O hydrogen bond into C(10) chains, which are linked into sheets by a π–π stacking interaction, whereas those of (III) are just linked into C(13) chains, again by a single C—H⋯O hydrogen bond. Comparisons are made with the structures of some related compounds. |
format | Online Article Text |
id | pubmed-8100276 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-81002762021-05-21 The crystal structures of three disordered 2-substituted benzimidazole esters Harish Chinthal, Chayanna Yathirajan, Hemmige S. Manju, Nagaraja Kalluraya, Balakrishna Foro, Sabine Glidewell, Christopher Acta Crystallogr E Crystallogr Commun Research Communications The crystal structures of three benzimidazole esters containing aryl or heterocyclic substituents at position 2 are reported, and all three exhibit disorder of molecular entities. In ethyl 1-methyl-2-[4-(prop-2-ynoxy)phenyl]-1H-benzimidazole-5-carboxylate, C(20)H(18)N(2)O(3), (I), the prop-2-yn-1-oxyphenyl unit is disordered over two sets of atomic sites having effectively equal occupancies, 0.506 (5) and 0.494 (5). The propyl substituent in ethyl 1-propyl-2-(pyren-1-yl)-1H-benzimidazole-5-carboxylate, C(29)H(24)N(2)O(2), (II), is disordered over two sets of atomic sites having occupancies 0.601 (8) and 0.399 (8), and the ester unit in ethyl 1-methyl-2-(5-chloro-3-methyl-1-phenyl-1H-pyrazol-4-yl)-1H-benzimidazole-5-carboxylate, C(21)H(19)ClN(4)O(2) (III), is disordered over two sets of atomic sites having occupancies 0.645 (7) and 0.355 (7). In each of the C—H⋯π(arene) hydrogen bonds in (I), the donor and acceptor form parts of different disorder components, so that no continuous aggregation is possible. The molecules of (II) are linked by a single C—H⋯O hydrogen bond into C(10) chains, which are linked into sheets by a π–π stacking interaction, whereas those of (III) are just linked into C(13) chains, again by a single C—H⋯O hydrogen bond. Comparisons are made with the structures of some related compounds. International Union of Crystallography 2021-04-09 /pmc/articles/PMC8100276/ /pubmed/34026249 http://dx.doi.org/10.1107/S2056989021003364 Text en © Harish Chinthal et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Communications Harish Chinthal, Chayanna Yathirajan, Hemmige S. Manju, Nagaraja Kalluraya, Balakrishna Foro, Sabine Glidewell, Christopher The crystal structures of three disordered 2-substituted benzimidazole esters |
title | The crystal structures of three disordered 2-substituted benzimidazole esters |
title_full | The crystal structures of three disordered 2-substituted benzimidazole esters |
title_fullStr | The crystal structures of three disordered 2-substituted benzimidazole esters |
title_full_unstemmed | The crystal structures of three disordered 2-substituted benzimidazole esters |
title_short | The crystal structures of three disordered 2-substituted benzimidazole esters |
title_sort | crystal structures of three disordered 2-substituted benzimidazole esters |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8100276/ https://www.ncbi.nlm.nih.gov/pubmed/34026249 http://dx.doi.org/10.1107/S2056989021003364 |
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