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Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8101478/ https://www.ncbi.nlm.nih.gov/pubmed/33987011 http://dx.doi.org/10.7717/peerj.11325 |
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author | Wu, Feifei Ma, Sainan Zhou, Jie Han, Chongyang Hu, Ruchang Yang, Xinying Nie, Gang Zhang, Xinquan |
author_facet | Wu, Feifei Ma, Sainan Zhou, Jie Han, Chongyang Hu, Ruchang Yang, Xinying Nie, Gang Zhang, Xinquan |
author_sort | Wu, Feifei |
collection | PubMed |
description | White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were amplified, out of which 337 (98.83%) were polymorphic. The PIC values ranged from 0.89 to 0.97 with an average of 0.95. For the AMOVA analysis, 98% of the variance was due to differences within the population and the remaining 2% was due to differences among populations. The white clover accessions were divided into different groups or subgroups based on PCoA, UPGMA, and STRUCTURE analyses. The existence of genetic differentiation between the originally natural and introduced areas according to the PCoA analysis of the global white clover accessions. There was a weak correlation between genetic relationships and geographic distribution according to UPGMA and STRUCTURE analyses. The results of the present study will provide the foundation for future breeding programs, genetic improvement, core germplasm collection establishment for white clover. |
format | Online Article Text |
id | pubmed-8101478 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81014782021-05-12 Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide Wu, Feifei Ma, Sainan Zhou, Jie Han, Chongyang Hu, Ruchang Yang, Xinying Nie, Gang Zhang, Xinquan PeerJ Agricultural Science White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were amplified, out of which 337 (98.83%) were polymorphic. The PIC values ranged from 0.89 to 0.97 with an average of 0.95. For the AMOVA analysis, 98% of the variance was due to differences within the population and the remaining 2% was due to differences among populations. The white clover accessions were divided into different groups or subgroups based on PCoA, UPGMA, and STRUCTURE analyses. The existence of genetic differentiation between the originally natural and introduced areas according to the PCoA analysis of the global white clover accessions. There was a weak correlation between genetic relationships and geographic distribution according to UPGMA and STRUCTURE analyses. The results of the present study will provide the foundation for future breeding programs, genetic improvement, core germplasm collection establishment for white clover. PeerJ Inc. 2021-05-03 /pmc/articles/PMC8101478/ /pubmed/33987011 http://dx.doi.org/10.7717/peerj.11325 Text en ©2021 Wu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Agricultural Science Wu, Feifei Ma, Sainan Zhou, Jie Han, Chongyang Hu, Ruchang Yang, Xinying Nie, Gang Zhang, Xinquan Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title | Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title_full | Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title_fullStr | Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title_full_unstemmed | Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title_short | Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide |
title_sort | genetic diversity and population structure analysis in a large collection of white clover (trifolium repens l.) germplasm worldwide |
topic | Agricultural Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8101478/ https://www.ncbi.nlm.nih.gov/pubmed/33987011 http://dx.doi.org/10.7717/peerj.11325 |
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