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Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide

White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were...

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Autores principales: Wu, Feifei, Ma, Sainan, Zhou, Jie, Han, Chongyang, Hu, Ruchang, Yang, Xinying, Nie, Gang, Zhang, Xinquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8101478/
https://www.ncbi.nlm.nih.gov/pubmed/33987011
http://dx.doi.org/10.7717/peerj.11325
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author Wu, Feifei
Ma, Sainan
Zhou, Jie
Han, Chongyang
Hu, Ruchang
Yang, Xinying
Nie, Gang
Zhang, Xinquan
author_facet Wu, Feifei
Ma, Sainan
Zhou, Jie
Han, Chongyang
Hu, Ruchang
Yang, Xinying
Nie, Gang
Zhang, Xinquan
author_sort Wu, Feifei
collection PubMed
description White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were amplified, out of which 337 (98.83%) were polymorphic. The PIC values ranged from 0.89 to 0.97 with an average of 0.95. For the AMOVA analysis, 98% of the variance was due to differences within the population and the remaining 2% was due to differences among populations. The white clover accessions were divided into different groups or subgroups based on PCoA, UPGMA, and STRUCTURE analyses. The existence of genetic differentiation between the originally natural and introduced areas according to the PCoA analysis of the global white clover accessions. There was a weak correlation between genetic relationships and geographic distribution according to UPGMA and STRUCTURE analyses. The results of the present study will provide the foundation for future breeding programs, genetic improvement, core germplasm collection establishment for white clover.
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spelling pubmed-81014782021-05-12 Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide Wu, Feifei Ma, Sainan Zhou, Jie Han, Chongyang Hu, Ruchang Yang, Xinying Nie, Gang Zhang, Xinquan PeerJ Agricultural Science White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were amplified, out of which 337 (98.83%) were polymorphic. The PIC values ranged from 0.89 to 0.97 with an average of 0.95. For the AMOVA analysis, 98% of the variance was due to differences within the population and the remaining 2% was due to differences among populations. The white clover accessions were divided into different groups or subgroups based on PCoA, UPGMA, and STRUCTURE analyses. The existence of genetic differentiation between the originally natural and introduced areas according to the PCoA analysis of the global white clover accessions. There was a weak correlation between genetic relationships and geographic distribution according to UPGMA and STRUCTURE analyses. The results of the present study will provide the foundation for future breeding programs, genetic improvement, core germplasm collection establishment for white clover. PeerJ Inc. 2021-05-03 /pmc/articles/PMC8101478/ /pubmed/33987011 http://dx.doi.org/10.7717/peerj.11325 Text en ©2021 Wu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Agricultural Science
Wu, Feifei
Ma, Sainan
Zhou, Jie
Han, Chongyang
Hu, Ruchang
Yang, Xinying
Nie, Gang
Zhang, Xinquan
Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title_full Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title_fullStr Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title_full_unstemmed Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title_short Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide
title_sort genetic diversity and population structure analysis in a large collection of white clover (trifolium repens l.) germplasm worldwide
topic Agricultural Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8101478/
https://www.ncbi.nlm.nih.gov/pubmed/33987011
http://dx.doi.org/10.7717/peerj.11325
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