Cargando…
Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep
OBJECTIVES: Dall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivor...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8103577/ https://www.ncbi.nlm.nih.gov/pubmed/33962681 http://dx.doi.org/10.1186/s13104-021-05590-z |
_version_ | 1783689333973188608 |
---|---|
author | Williams, Kelly E. Menning, Damian M. Wald, Eric J. Talbot, Sandra L. Rattenbury, Kumi L. Prugh, Laura R. |
author_facet | Williams, Kelly E. Menning, Damian M. Wald, Eric J. Talbot, Sandra L. Rattenbury, Kumi L. Prugh, Laura R. |
author_sort | Williams, Kelly E. |
collection | PubMed |
description | OBJECTIVES: Dall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivores by contributing new sequence data for arctic and alpine plants. This expanded reference library will provide critical reference sequence data that will facilitate metabarcoding diet analysis of Dall’s sheep and thus improve understanding of plant-animal interactions in a region undergoing rapid climate change. DATA DESCRIPTION: We provide sequences for the chloroplast rbcL gene of 16 arctic-alpine vascular plant species that are known to comprise the diet of Dall’s sheep. These sequences contribute to a growing reference library that can be used in diet studies of arctic herbivores. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05590-z. |
format | Online Article Text |
id | pubmed-8103577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-81035772021-05-10 Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep Williams, Kelly E. Menning, Damian M. Wald, Eric J. Talbot, Sandra L. Rattenbury, Kumi L. Prugh, Laura R. BMC Res Notes Data Note OBJECTIVES: Dall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivores by contributing new sequence data for arctic and alpine plants. This expanded reference library will provide critical reference sequence data that will facilitate metabarcoding diet analysis of Dall’s sheep and thus improve understanding of plant-animal interactions in a region undergoing rapid climate change. DATA DESCRIPTION: We provide sequences for the chloroplast rbcL gene of 16 arctic-alpine vascular plant species that are known to comprise the diet of Dall’s sheep. These sequences contribute to a growing reference library that can be used in diet studies of arctic herbivores. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05590-z. BioMed Central 2021-05-07 /pmc/articles/PMC8103577/ /pubmed/33962681 http://dx.doi.org/10.1186/s13104-021-05590-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Data Note Williams, Kelly E. Menning, Damian M. Wald, Eric J. Talbot, Sandra L. Rattenbury, Kumi L. Prugh, Laura R. Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title | Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title_full | Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title_fullStr | Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title_full_unstemmed | Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title_short | Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep |
title_sort | using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for dall’s sheep |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8103577/ https://www.ncbi.nlm.nih.gov/pubmed/33962681 http://dx.doi.org/10.1186/s13104-021-05590-z |
work_keys_str_mv | AT williamskellye usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep AT menningdamianm usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep AT waldericj usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep AT talbotsandral usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep AT rattenburykumil usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep AT prughlaurar usingnextgenerationsequencingofalpineplantstoimprovefecalmetabarcodingdietanalysisfordallssheep |