Cargando…

Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database

Currently, the coronavirus disease 2019 (COVID19) pandemic has killed more than one million people worldwide. In the present outbreak, radiological imaging modalities such as computed tomography (CT) and X-rays are being used to diagnose this disease, particularly in the early stage. However, the as...

Descripción completa

Detalles Bibliográficos
Autores principales: Owais, Muhammad, Yoon, Hyo Sik, Mahmood, Tahir, Haider, Adnan, Sultan, Haseeb, Park, Kang Ryoung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8103783/
https://www.ncbi.nlm.nih.gov/pubmed/33994894
http://dx.doi.org/10.1016/j.asoc.2021.107490
_version_ 1783689367380819968
author Owais, Muhammad
Yoon, Hyo Sik
Mahmood, Tahir
Haider, Adnan
Sultan, Haseeb
Park, Kang Ryoung
author_facet Owais, Muhammad
Yoon, Hyo Sik
Mahmood, Tahir
Haider, Adnan
Sultan, Haseeb
Park, Kang Ryoung
author_sort Owais, Muhammad
collection PubMed
description Currently, the coronavirus disease 2019 (COVID19) pandemic has killed more than one million people worldwide. In the present outbreak, radiological imaging modalities such as computed tomography (CT) and X-rays are being used to diagnose this disease, particularly in the early stage. However, the assessment of radiographic images includes a subjective evaluation that is time-consuming and requires substantial clinical skills. Nevertheless, the recent evolution in artificial intelligence (AI) has further strengthened the ability of computer-aided diagnosis tools and supported medical professionals in making effective diagnostic decisions. Therefore, in this study, the strength of various AI algorithms was analyzed to diagnose COVID19 infection from large-scale radiographic datasets. Based on this analysis, a light-weighted deep network is proposed, which is the first ensemble design (based on MobileNet, ShuffleNet, and FCNet) in medical domain (particularly for COVID19 diagnosis) that encompasses the reduced number of trainable parameters (a total of 3.16 million parameters) and outperforms the various existing models. Moreover, the addition of a multilevel activation visualization layer in the proposed network further visualizes the lesion patterns as multilevel class activation maps (ML-CAMs) along with the diagnostic result (either COVID19 positive or negative). Such additional output as ML-CAMs provides a visual insight of the computer decision and may assist radiologists in validating it, particularly in uncertain situations Additionally, a novel hierarchical training procedure was adopted to perform the training of the proposed network. It proceeds the network training by the adaptive number of epochs based on the validation dataset rather than using the fixed number of epochs. The quantitative results show the better performance of the proposed training method over the conventional end-to-end training procedure. A large collection of CT-scan and X-ray datasets (based on six publicly available datasets) was used to evaluate the performance of the proposed model and other baseline methods. The experimental results of the proposed network exhibit a promising performance in terms of diagnostic decision. An average F1 score (F1) of 94.60% and 95.94% and area under the curve (AUC) of 97.50% and 97.99% are achieved for the CT-scan and X-ray datasets, respectively. Finally, the detailed comparative analysis reveals that the proposed model outperforms the various state-of-the-art methods in terms of both quantitative and computational performance.
format Online
Article
Text
id pubmed-8103783
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier B.V.
record_format MEDLINE/PubMed
spelling pubmed-81037832021-05-10 Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database Owais, Muhammad Yoon, Hyo Sik Mahmood, Tahir Haider, Adnan Sultan, Haseeb Park, Kang Ryoung Appl Soft Comput Article Currently, the coronavirus disease 2019 (COVID19) pandemic has killed more than one million people worldwide. In the present outbreak, radiological imaging modalities such as computed tomography (CT) and X-rays are being used to diagnose this disease, particularly in the early stage. However, the assessment of radiographic images includes a subjective evaluation that is time-consuming and requires substantial clinical skills. Nevertheless, the recent evolution in artificial intelligence (AI) has further strengthened the ability of computer-aided diagnosis tools and supported medical professionals in making effective diagnostic decisions. Therefore, in this study, the strength of various AI algorithms was analyzed to diagnose COVID19 infection from large-scale radiographic datasets. Based on this analysis, a light-weighted deep network is proposed, which is the first ensemble design (based on MobileNet, ShuffleNet, and FCNet) in medical domain (particularly for COVID19 diagnosis) that encompasses the reduced number of trainable parameters (a total of 3.16 million parameters) and outperforms the various existing models. Moreover, the addition of a multilevel activation visualization layer in the proposed network further visualizes the lesion patterns as multilevel class activation maps (ML-CAMs) along with the diagnostic result (either COVID19 positive or negative). Such additional output as ML-CAMs provides a visual insight of the computer decision and may assist radiologists in validating it, particularly in uncertain situations Additionally, a novel hierarchical training procedure was adopted to perform the training of the proposed network. It proceeds the network training by the adaptive number of epochs based on the validation dataset rather than using the fixed number of epochs. The quantitative results show the better performance of the proposed training method over the conventional end-to-end training procedure. A large collection of CT-scan and X-ray datasets (based on six publicly available datasets) was used to evaluate the performance of the proposed model and other baseline methods. The experimental results of the proposed network exhibit a promising performance in terms of diagnostic decision. An average F1 score (F1) of 94.60% and 95.94% and area under the curve (AUC) of 97.50% and 97.99% are achieved for the CT-scan and X-ray datasets, respectively. Finally, the detailed comparative analysis reveals that the proposed model outperforms the various state-of-the-art methods in terms of both quantitative and computational performance. Elsevier B.V. 2021-09 2021-05-07 /pmc/articles/PMC8103783/ /pubmed/33994894 http://dx.doi.org/10.1016/j.asoc.2021.107490 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Owais, Muhammad
Yoon, Hyo Sik
Mahmood, Tahir
Haider, Adnan
Sultan, Haseeb
Park, Kang Ryoung
Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title_full Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title_fullStr Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title_full_unstemmed Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title_short Light-weighted ensemble network with multilevel activation visualization for robust diagnosis of COVID19 pneumonia from large-scale chest radiographic database
title_sort light-weighted ensemble network with multilevel activation visualization for robust diagnosis of covid19 pneumonia from large-scale chest radiographic database
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8103783/
https://www.ncbi.nlm.nih.gov/pubmed/33994894
http://dx.doi.org/10.1016/j.asoc.2021.107490
work_keys_str_mv AT owaismuhammad lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase
AT yoonhyosik lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase
AT mahmoodtahir lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase
AT haideradnan lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase
AT sultanhaseeb lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase
AT parkkangryoung lightweightedensemblenetworkwithmultilevelactivationvisualizationforrobustdiagnosisofcovid19pneumoniafromlargescalechestradiographicdatabase