Cargando…

Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction

Hymenoptera is a hyperdiverse insect order represented by over 153,000 different species. As many hymenopteran species perform various crucial roles for our environments, such as pollination, herbivory, and parasitism, they are of high economic and ecological importance. There are 99 hymenopteran ge...

Descripción completa

Detalles Bibliográficos
Autores principales: Michell, Craig, Wutke, Saskia, Aranda, Manuel, Nyman, Tommi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8104934/
https://www.ncbi.nlm.nih.gov/pubmed/33788947
http://dx.doi.org/10.1093/g3journal/jkab094
_version_ 1783689514425778176
author Michell, Craig
Wutke, Saskia
Aranda, Manuel
Nyman, Tommi
author_facet Michell, Craig
Wutke, Saskia
Aranda, Manuel
Nyman, Tommi
author_sort Michell, Craig
collection PubMed
description Hymenoptera is a hyperdiverse insect order represented by over 153,000 different species. As many hymenopteran species perform various crucial roles for our environments, such as pollination, herbivory, and parasitism, they are of high economic and ecological importance. There are 99 hymenopteran genomes in the NCBI database, yet only five are representative of the paraphyletic suborder Symphyta (sawflies, woodwasps, and horntails), while the rest represent the suborder Apocrita (bees, wasps, and ants). Here, using a combination of 10X Genomics linked-read sequencing, Oxford Nanopore long-read technology, and Illumina short-read data, we assembled the genomes of two willow-galling sawflies (Hymenoptera: Tenthredinidae: Nematinae: Euurina): the bud-galling species Euura lappo and the leaf-galling species Eupontania aestiva. The final assembly for E. lappo is 259.85 Mbp in size, with a contig N50 of 209.0 kbp and a BUSCO score of 93.5%. The E. aestiva genome is 222.23 Mbp in size, with a contig N50 of 49.7 kbp and a 90.2% complete BUSCO score. De novo annotation of repetitive elements showed that 27.45% of the genome was composed of repetitive elements in E. lappo and 16.89% in E. aestiva, which is a marked increase compared to previously published hymenopteran genomes. The genomes presented here provide a resource for inferring phylogenetic relationships among basal hymenopterans, comparative studies on host-related genomic adaptation in plant-feeding insects, and research on the mechanisms of plant manipulation by gall-inducing insects.
format Online
Article
Text
id pubmed-8104934
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-81049342021-05-11 Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction Michell, Craig Wutke, Saskia Aranda, Manuel Nyman, Tommi G3 (Bethesda) Genome Report Hymenoptera is a hyperdiverse insect order represented by over 153,000 different species. As many hymenopteran species perform various crucial roles for our environments, such as pollination, herbivory, and parasitism, they are of high economic and ecological importance. There are 99 hymenopteran genomes in the NCBI database, yet only five are representative of the paraphyletic suborder Symphyta (sawflies, woodwasps, and horntails), while the rest represent the suborder Apocrita (bees, wasps, and ants). Here, using a combination of 10X Genomics linked-read sequencing, Oxford Nanopore long-read technology, and Illumina short-read data, we assembled the genomes of two willow-galling sawflies (Hymenoptera: Tenthredinidae: Nematinae: Euurina): the bud-galling species Euura lappo and the leaf-galling species Eupontania aestiva. The final assembly for E. lappo is 259.85 Mbp in size, with a contig N50 of 209.0 kbp and a BUSCO score of 93.5%. The E. aestiva genome is 222.23 Mbp in size, with a contig N50 of 49.7 kbp and a 90.2% complete BUSCO score. De novo annotation of repetitive elements showed that 27.45% of the genome was composed of repetitive elements in E. lappo and 16.89% in E. aestiva, which is a marked increase compared to previously published hymenopteran genomes. The genomes presented here provide a resource for inferring phylogenetic relationships among basal hymenopterans, comparative studies on host-related genomic adaptation in plant-feeding insects, and research on the mechanisms of plant manipulation by gall-inducing insects. Oxford University Press 2021-03-31 /pmc/articles/PMC8104934/ /pubmed/33788947 http://dx.doi.org/10.1093/g3journal/jkab094 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Michell, Craig
Wutke, Saskia
Aranda, Manuel
Nyman, Tommi
Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title_full Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title_fullStr Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title_full_unstemmed Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title_short Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
title_sort genomes of the willow-galling sawflies euura lappo and eupontania aestiva (hymenoptera: tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8104934/
https://www.ncbi.nlm.nih.gov/pubmed/33788947
http://dx.doi.org/10.1093/g3journal/jkab094
work_keys_str_mv AT michellcraig genomesofthewillowgallingsawflieseuuralappoandeupontaniaaestivahymenopteratenthredinidaearesourceforresearchonecologicalspeciationadaptationandgallinduction
AT wutkesaskia genomesofthewillowgallingsawflieseuuralappoandeupontaniaaestivahymenopteratenthredinidaearesourceforresearchonecologicalspeciationadaptationandgallinduction
AT arandamanuel genomesofthewillowgallingsawflieseuuralappoandeupontaniaaestivahymenopteratenthredinidaearesourceforresearchonecologicalspeciationadaptationandgallinduction
AT nymantommi genomesofthewillowgallingsawflieseuuralappoandeupontaniaaestivahymenopteratenthredinidaearesourceforresearchonecologicalspeciationadaptationandgallinduction