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A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications

Lung cancer is a leading cause of cancer death in both men and women worldwide. The high mortality rate in lung cancer is in part due to late-stage diagnostics as well as spread of cancer-cells to organs and tissues by metastasis. Automated lung cancer detection and its sub-types classification from...

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Autores principales: Hashemzadeh, Hadi, Shojaeilangari, Seyedehsamaneh, Allahverdi, Abdollah, Rothbauer, Mario, Ertl, Peter, Naderi-Manesh, Hossein
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105370/
https://www.ncbi.nlm.nih.gov/pubmed/33963232
http://dx.doi.org/10.1038/s41598-021-89352-8
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author Hashemzadeh, Hadi
Shojaeilangari, Seyedehsamaneh
Allahverdi, Abdollah
Rothbauer, Mario
Ertl, Peter
Naderi-Manesh, Hossein
author_facet Hashemzadeh, Hadi
Shojaeilangari, Seyedehsamaneh
Allahverdi, Abdollah
Rothbauer, Mario
Ertl, Peter
Naderi-Manesh, Hossein
author_sort Hashemzadeh, Hadi
collection PubMed
description Lung cancer is a leading cause of cancer death in both men and women worldwide. The high mortality rate in lung cancer is in part due to late-stage diagnostics as well as spread of cancer-cells to organs and tissues by metastasis. Automated lung cancer detection and its sub-types classification from cell’s images play a crucial role toward an early-stage cancer prognosis and more individualized therapy. The rapid development of machine learning techniques, especially deep learning algorithms, has attracted much interest in its application to medical image problems. In this study, to develop a reliable Computer-Aided Diagnosis (CAD) system for accurately distinguishing between cancer and healthy cells, we grew popular Non-Small Lung Cancer lines in a microfluidic chip followed by staining with Phalloidin and images were obtained by using an IX-81 inverted Olympus fluorescence microscope. We designed and tested a deep learning image analysis workflow for classification of lung cancer cell-line images into six classes, including five different cancer cell-lines (P-C9, SK-LU-1, H-1975, A-427, and A-549) and normal cell-line (16-HBE). Our results demonstrate that ResNet18, a residual learning convolutional neural network, is an efficient and promising method for lung cancer cell-lines categorization with a classification accuracy of 98.37% and F1-score of 97.29%. Our proposed workflow is also able to successfully distinguish normal versus cancerous cell-lines with a remarkable average accuracy of 99.77% and F1-score of 99.87%. The proposed CAD system completely eliminates the need for extensive user intervention, enabling the processing of large amounts of image data with robust and highly accurate results.
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spelling pubmed-81053702021-05-10 A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications Hashemzadeh, Hadi Shojaeilangari, Seyedehsamaneh Allahverdi, Abdollah Rothbauer, Mario Ertl, Peter Naderi-Manesh, Hossein Sci Rep Article Lung cancer is a leading cause of cancer death in both men and women worldwide. The high mortality rate in lung cancer is in part due to late-stage diagnostics as well as spread of cancer-cells to organs and tissues by metastasis. Automated lung cancer detection and its sub-types classification from cell’s images play a crucial role toward an early-stage cancer prognosis and more individualized therapy. The rapid development of machine learning techniques, especially deep learning algorithms, has attracted much interest in its application to medical image problems. In this study, to develop a reliable Computer-Aided Diagnosis (CAD) system for accurately distinguishing between cancer and healthy cells, we grew popular Non-Small Lung Cancer lines in a microfluidic chip followed by staining with Phalloidin and images were obtained by using an IX-81 inverted Olympus fluorescence microscope. We designed and tested a deep learning image analysis workflow for classification of lung cancer cell-line images into six classes, including five different cancer cell-lines (P-C9, SK-LU-1, H-1975, A-427, and A-549) and normal cell-line (16-HBE). Our results demonstrate that ResNet18, a residual learning convolutional neural network, is an efficient and promising method for lung cancer cell-lines categorization with a classification accuracy of 98.37% and F1-score of 97.29%. Our proposed workflow is also able to successfully distinguish normal versus cancerous cell-lines with a remarkable average accuracy of 99.77% and F1-score of 99.87%. The proposed CAD system completely eliminates the need for extensive user intervention, enabling the processing of large amounts of image data with robust and highly accurate results. Nature Publishing Group UK 2021-05-07 /pmc/articles/PMC8105370/ /pubmed/33963232 http://dx.doi.org/10.1038/s41598-021-89352-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hashemzadeh, Hadi
Shojaeilangari, Seyedehsamaneh
Allahverdi, Abdollah
Rothbauer, Mario
Ertl, Peter
Naderi-Manesh, Hossein
A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title_full A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title_fullStr A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title_full_unstemmed A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title_short A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
title_sort combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105370/
https://www.ncbi.nlm.nih.gov/pubmed/33963232
http://dx.doi.org/10.1038/s41598-021-89352-8
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