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Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human anno...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105505/ https://www.ncbi.nlm.nih.gov/pubmed/33745882 http://dx.doi.org/10.1016/j.ebiom.2021.103275 |
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author | Roy, Subhrajit Kiral, Isabell Mirmomeni, Mahtab Mummert, Todd Braz, Alan Tsay, Jason Tang, Jianbin Asif, Umar Schaffter, Thomas Ahsen, Mehmet Eren Iwamori, Toshiya Yanagisawa, Hiroki Poonawala, Hasan Madan, Piyush Qin, Yong Picone, Joseph Obeid, Iyad Marques, Bruno De Assis Maetschke, Stefan Khalaf, Rania Rosen-Zvi, Michal Stolovitzky, Gustavo Harrer, Stefan |
author_facet | Roy, Subhrajit Kiral, Isabell Mirmomeni, Mahtab Mummert, Todd Braz, Alan Tsay, Jason Tang, Jianbin Asif, Umar Schaffter, Thomas Ahsen, Mehmet Eren Iwamori, Toshiya Yanagisawa, Hiroki Poonawala, Hasan Madan, Piyush Qin, Yong Picone, Joseph Obeid, Iyad Marques, Bruno De Assis Maetschke, Stefan Khalaf, Rania Rosen-Zvi, Michal Stolovitzky, Gustavo Harrer, Stefan |
author_sort | Roy, Subhrajit |
collection | PubMed |
description | BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human annotation times. The system uses custom data preparation methods, deep learning analytics and electroencephalography (EEG) data. METHODS: Scalp EEG data of 365 patients containing 171,745 s ictal and 2,185,864 s interictal samples obtained from clinical monitoring systems were analysed as part of a crowdsourced artificial intelligence (AI) challenge. Participants were tasked to develop an ictal/interictal classifier with high sensitivity and low false alarm rates. We built a challenge platform that prevented participants from downloading or directly accessing the data while allowing crowdsourced model development. FINDINGS: The automatic detection system achieved tunable sensitivities between 75.00% and 91.60% allowing a reduction in the amount of raw EEG data to be reviewed by a human annotator by factors between 142x, and 22x respectively. The algorithm enables instantaneous reviewer-managed optimization of the balance between sensitivity and the amount of raw EEG data to be reviewed. INTERPRETATION: This study demonstrates the utility of deep learning for patient-specific seizure detection in EEG data. Furthermore, deep learning in combination with a human reviewer can provide the basis for an assistive data labelling system lowering the time of manual review while maintaining human expert annotation performance. FUNDING: IBM employed all IBM Research authors. Temple University employed all Temple University authors. The Icahn School of Medicine at Mount Sinai employed Eren Ahsen. The corresponding authors Stefan Harrer and Gustavo Stolovitzky declare that they had full access to all the data in the study and that they had final responsibility for the decision to submit for publication. |
format | Online Article Text |
id | pubmed-8105505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-81055052021-05-14 Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data Roy, Subhrajit Kiral, Isabell Mirmomeni, Mahtab Mummert, Todd Braz, Alan Tsay, Jason Tang, Jianbin Asif, Umar Schaffter, Thomas Ahsen, Mehmet Eren Iwamori, Toshiya Yanagisawa, Hiroki Poonawala, Hasan Madan, Piyush Qin, Yong Picone, Joseph Obeid, Iyad Marques, Bruno De Assis Maetschke, Stefan Khalaf, Rania Rosen-Zvi, Michal Stolovitzky, Gustavo Harrer, Stefan EBioMedicine Research Paper BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human annotation times. The system uses custom data preparation methods, deep learning analytics and electroencephalography (EEG) data. METHODS: Scalp EEG data of 365 patients containing 171,745 s ictal and 2,185,864 s interictal samples obtained from clinical monitoring systems were analysed as part of a crowdsourced artificial intelligence (AI) challenge. Participants were tasked to develop an ictal/interictal classifier with high sensitivity and low false alarm rates. We built a challenge platform that prevented participants from downloading or directly accessing the data while allowing crowdsourced model development. FINDINGS: The automatic detection system achieved tunable sensitivities between 75.00% and 91.60% allowing a reduction in the amount of raw EEG data to be reviewed by a human annotator by factors between 142x, and 22x respectively. The algorithm enables instantaneous reviewer-managed optimization of the balance between sensitivity and the amount of raw EEG data to be reviewed. INTERPRETATION: This study demonstrates the utility of deep learning for patient-specific seizure detection in EEG data. Furthermore, deep learning in combination with a human reviewer can provide the basis for an assistive data labelling system lowering the time of manual review while maintaining human expert annotation performance. FUNDING: IBM employed all IBM Research authors. Temple University employed all Temple University authors. The Icahn School of Medicine at Mount Sinai employed Eren Ahsen. The corresponding authors Stefan Harrer and Gustavo Stolovitzky declare that they had full access to all the data in the study and that they had final responsibility for the decision to submit for publication. Elsevier 2021-03-18 /pmc/articles/PMC8105505/ /pubmed/33745882 http://dx.doi.org/10.1016/j.ebiom.2021.103275 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Paper Roy, Subhrajit Kiral, Isabell Mirmomeni, Mahtab Mummert, Todd Braz, Alan Tsay, Jason Tang, Jianbin Asif, Umar Schaffter, Thomas Ahsen, Mehmet Eren Iwamori, Toshiya Yanagisawa, Hiroki Poonawala, Hasan Madan, Piyush Qin, Yong Picone, Joseph Obeid, Iyad Marques, Bruno De Assis Maetschke, Stefan Khalaf, Rania Rosen-Zvi, Michal Stolovitzky, Gustavo Harrer, Stefan Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title | Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title_full | Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title_fullStr | Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title_full_unstemmed | Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title_short | Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
title_sort | evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105505/ https://www.ncbi.nlm.nih.gov/pubmed/33745882 http://dx.doi.org/10.1016/j.ebiom.2021.103275 |
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