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Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data

BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human anno...

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Autores principales: Roy, Subhrajit, Kiral, Isabell, Mirmomeni, Mahtab, Mummert, Todd, Braz, Alan, Tsay, Jason, Tang, Jianbin, Asif, Umar, Schaffter, Thomas, Ahsen, Mehmet Eren, Iwamori, Toshiya, Yanagisawa, Hiroki, Poonawala, Hasan, Madan, Piyush, Qin, Yong, Picone, Joseph, Obeid, Iyad, Marques, Bruno De Assis, Maetschke, Stefan, Khalaf, Rania, Rosen-Zvi, Michal, Stolovitzky, Gustavo, Harrer, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105505/
https://www.ncbi.nlm.nih.gov/pubmed/33745882
http://dx.doi.org/10.1016/j.ebiom.2021.103275
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author Roy, Subhrajit
Kiral, Isabell
Mirmomeni, Mahtab
Mummert, Todd
Braz, Alan
Tsay, Jason
Tang, Jianbin
Asif, Umar
Schaffter, Thomas
Ahsen, Mehmet Eren
Iwamori, Toshiya
Yanagisawa, Hiroki
Poonawala, Hasan
Madan, Piyush
Qin, Yong
Picone, Joseph
Obeid, Iyad
Marques, Bruno De Assis
Maetschke, Stefan
Khalaf, Rania
Rosen-Zvi, Michal
Stolovitzky, Gustavo
Harrer, Stefan
author_facet Roy, Subhrajit
Kiral, Isabell
Mirmomeni, Mahtab
Mummert, Todd
Braz, Alan
Tsay, Jason
Tang, Jianbin
Asif, Umar
Schaffter, Thomas
Ahsen, Mehmet Eren
Iwamori, Toshiya
Yanagisawa, Hiroki
Poonawala, Hasan
Madan, Piyush
Qin, Yong
Picone, Joseph
Obeid, Iyad
Marques, Bruno De Assis
Maetschke, Stefan
Khalaf, Rania
Rosen-Zvi, Michal
Stolovitzky, Gustavo
Harrer, Stefan
author_sort Roy, Subhrajit
collection PubMed
description BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human annotation times. The system uses custom data preparation methods, deep learning analytics and electroencephalography (EEG) data. METHODS: Scalp EEG data of 365 patients containing 171,745 s ictal and 2,185,864 s interictal samples obtained from clinical monitoring systems were analysed as part of a crowdsourced artificial intelligence (AI) challenge. Participants were tasked to develop an ictal/interictal classifier with high sensitivity and low false alarm rates. We built a challenge platform that prevented participants from downloading or directly accessing the data while allowing crowdsourced model development. FINDINGS: The automatic detection system achieved tunable sensitivities between 75.00% and 91.60% allowing a reduction in the amount of raw EEG data to be reviewed by a human annotator by factors between 142x, and 22x respectively. The algorithm enables instantaneous reviewer-managed optimization of the balance between sensitivity and the amount of raw EEG data to be reviewed. INTERPRETATION: This study demonstrates the utility of deep learning for patient-specific seizure detection in EEG data. Furthermore, deep learning in combination with a human reviewer can provide the basis for an assistive data labelling system lowering the time of manual review while maintaining human expert annotation performance. FUNDING: IBM employed all IBM Research authors. Temple University employed all Temple University authors. The Icahn School of Medicine at Mount Sinai employed Eren Ahsen. The corresponding authors Stefan Harrer and Gustavo Stolovitzky declare that they had full access to all the data in the study and that they had final responsibility for the decision to submit for publication.
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spelling pubmed-81055052021-05-14 Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data Roy, Subhrajit Kiral, Isabell Mirmomeni, Mahtab Mummert, Todd Braz, Alan Tsay, Jason Tang, Jianbin Asif, Umar Schaffter, Thomas Ahsen, Mehmet Eren Iwamori, Toshiya Yanagisawa, Hiroki Poonawala, Hasan Madan, Piyush Qin, Yong Picone, Joseph Obeid, Iyad Marques, Bruno De Assis Maetschke, Stefan Khalaf, Rania Rosen-Zvi, Michal Stolovitzky, Gustavo Harrer, Stefan EBioMedicine Research Paper BACKGROUND: Assistive automatic seizure detection can empower human annotators to shorten patient monitoring data review times. We present a proof-of-concept for a seizure detection system that is sensitive, automated, patient-specific, and tunable to maximise sensitivity while minimizing human annotation times. The system uses custom data preparation methods, deep learning analytics and electroencephalography (EEG) data. METHODS: Scalp EEG data of 365 patients containing 171,745 s ictal and 2,185,864 s interictal samples obtained from clinical monitoring systems were analysed as part of a crowdsourced artificial intelligence (AI) challenge. Participants were tasked to develop an ictal/interictal classifier with high sensitivity and low false alarm rates. We built a challenge platform that prevented participants from downloading or directly accessing the data while allowing crowdsourced model development. FINDINGS: The automatic detection system achieved tunable sensitivities between 75.00% and 91.60% allowing a reduction in the amount of raw EEG data to be reviewed by a human annotator by factors between 142x, and 22x respectively. The algorithm enables instantaneous reviewer-managed optimization of the balance between sensitivity and the amount of raw EEG data to be reviewed. INTERPRETATION: This study demonstrates the utility of deep learning for patient-specific seizure detection in EEG data. Furthermore, deep learning in combination with a human reviewer can provide the basis for an assistive data labelling system lowering the time of manual review while maintaining human expert annotation performance. FUNDING: IBM employed all IBM Research authors. Temple University employed all Temple University authors. The Icahn School of Medicine at Mount Sinai employed Eren Ahsen. The corresponding authors Stefan Harrer and Gustavo Stolovitzky declare that they had full access to all the data in the study and that they had final responsibility for the decision to submit for publication. Elsevier 2021-03-18 /pmc/articles/PMC8105505/ /pubmed/33745882 http://dx.doi.org/10.1016/j.ebiom.2021.103275 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Roy, Subhrajit
Kiral, Isabell
Mirmomeni, Mahtab
Mummert, Todd
Braz, Alan
Tsay, Jason
Tang, Jianbin
Asif, Umar
Schaffter, Thomas
Ahsen, Mehmet Eren
Iwamori, Toshiya
Yanagisawa, Hiroki
Poonawala, Hasan
Madan, Piyush
Qin, Yong
Picone, Joseph
Obeid, Iyad
Marques, Bruno De Assis
Maetschke, Stefan
Khalaf, Rania
Rosen-Zvi, Michal
Stolovitzky, Gustavo
Harrer, Stefan
Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title_full Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title_fullStr Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title_full_unstemmed Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title_short Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
title_sort evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8105505/
https://www.ncbi.nlm.nih.gov/pubmed/33745882
http://dx.doi.org/10.1016/j.ebiom.2021.103275
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