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Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma
Enhancer RNAs (eRNAs) participate in tumor growth and immune regulation through complex signaling pathways. However, the immune-related function of the eRNA-mRNA axis in lung adenocarcinoma (LUAD) is unclear. Data on the expression of eRNAs and mRNAs were downloaded from The Cancer Genome Atlas, GEO...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111304/ https://www.ncbi.nlm.nih.gov/pubmed/33987201 http://dx.doi.org/10.3389/fmolb.2021.644557 |
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author | Ma, Jiakang Lin, Xiaoyan Wang, Xueting Min, Qingqing Wang, Tonglian Tang, Chaozhi |
author_facet | Ma, Jiakang Lin, Xiaoyan Wang, Xueting Min, Qingqing Wang, Tonglian Tang, Chaozhi |
author_sort | Ma, Jiakang |
collection | PubMed |
description | Enhancer RNAs (eRNAs) participate in tumor growth and immune regulation through complex signaling pathways. However, the immune-related function of the eRNA-mRNA axis in lung adenocarcinoma (LUAD) is unclear. Data on the expression of eRNAs and mRNAs were downloaded from The Cancer Genome Atlas, GEO, and UCSC Xena, including LUAD, and pan-cancer clinical data and mutational information. Immune gene files were obtained from ImmLnc and ImmPort databases. Survival indices, including relapse-free and overall survival, were analyzed using the Kaplan–Meier and log-rank methods. The level of immune cell infiltration, degree of tumor hypoxia, and tumor cell stemness characteristics were quantified using the single-sample gene set enrichment analysis algorithm. The immune infiltration score and infiltration degree were evaluated using the ESTIMATE and CIBERSORT algorithms. The tumor mutation burden and microsatellite instability were examined using the Spearman test. The LUAD-associated immune-related LINC00987/A2M axis was down-regulated in most cancer types, indicating poor survival and cancer progression. Immune cell infiltration was closely related to abnormal expression of the LINC00987/A2M axis, linking its expression to a possible evaluation of sensitivity to checkpoint inhibitors and response to chemotherapy. Abnormal expression of the LINC00987/A2M axis was characterized by heterogeneity in the degree of tumor hypoxia and stemness characteristics. The abnormal distribution of immune cells in LUAD was also verified through pan-cancer analysis. Comprehensive bioinformatic analysis showed that the LINC00987/A2M axis is a functional and effective tumor suppressor and biomarker for assessing the immune microenvironment and prognostic and therapeutic evaluations of LUAD. |
format | Online Article Text |
id | pubmed-8111304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81113042021-05-12 Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma Ma, Jiakang Lin, Xiaoyan Wang, Xueting Min, Qingqing Wang, Tonglian Tang, Chaozhi Front Mol Biosci Molecular Biosciences Enhancer RNAs (eRNAs) participate in tumor growth and immune regulation through complex signaling pathways. However, the immune-related function of the eRNA-mRNA axis in lung adenocarcinoma (LUAD) is unclear. Data on the expression of eRNAs and mRNAs were downloaded from The Cancer Genome Atlas, GEO, and UCSC Xena, including LUAD, and pan-cancer clinical data and mutational information. Immune gene files were obtained from ImmLnc and ImmPort databases. Survival indices, including relapse-free and overall survival, were analyzed using the Kaplan–Meier and log-rank methods. The level of immune cell infiltration, degree of tumor hypoxia, and tumor cell stemness characteristics were quantified using the single-sample gene set enrichment analysis algorithm. The immune infiltration score and infiltration degree were evaluated using the ESTIMATE and CIBERSORT algorithms. The tumor mutation burden and microsatellite instability were examined using the Spearman test. The LUAD-associated immune-related LINC00987/A2M axis was down-regulated in most cancer types, indicating poor survival and cancer progression. Immune cell infiltration was closely related to abnormal expression of the LINC00987/A2M axis, linking its expression to a possible evaluation of sensitivity to checkpoint inhibitors and response to chemotherapy. Abnormal expression of the LINC00987/A2M axis was characterized by heterogeneity in the degree of tumor hypoxia and stemness characteristics. The abnormal distribution of immune cells in LUAD was also verified through pan-cancer analysis. Comprehensive bioinformatic analysis showed that the LINC00987/A2M axis is a functional and effective tumor suppressor and biomarker for assessing the immune microenvironment and prognostic and therapeutic evaluations of LUAD. Frontiers Media S.A. 2021-04-27 /pmc/articles/PMC8111304/ /pubmed/33987201 http://dx.doi.org/10.3389/fmolb.2021.644557 Text en Copyright © 2021 Ma, Lin, Wang, Min, Wang and Tang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Ma, Jiakang Lin, Xiaoyan Wang, Xueting Min, Qingqing Wang, Tonglian Tang, Chaozhi Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title | Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title_full | Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title_fullStr | Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title_full_unstemmed | Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title_short | Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma |
title_sort | reconstruction and analysis of the immune-related linc00987/a2m axis in lung adenocarcinoma |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111304/ https://www.ncbi.nlm.nih.gov/pubmed/33987201 http://dx.doi.org/10.3389/fmolb.2021.644557 |
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