Cargando…

Feasibility of Phosphoproteomics on Leftover Samples After RNA Extraction With Guanidinium Thiocyanate

In daily practice, different types of biomolecules are usually extracted for large-scale “omics” analysis with tailored protocols. However, when sample material is limited, an all-in-one strategy is preferable. Although lysis of cells and tissues with urea is widely used for phosphoproteomic applica...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rolfs, Frank, Piersma, Sander R., Dias, Mariana Paes, Jonkers, Jos, Jimenez, Connie R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Biochemistry and Molecular Biology 2021
Materias:	Technological Innovation and Resources
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111777/ https://www.ncbi.nlm.nih.gov/pubmed/33819647 http://dx.doi.org/10.1016/j.mcpro.2021.100078

Ejemplares similares

Bioinertization of NanoLC/MS/MS Systems by Depleting Metal Ions From the Mobile Phases for Phosphoproteomics
por: Komori, Yumi, et al.
Publicado: (2023)

SIMSI-Transfer: Software-Assisted Reduction of Missing Values in Phosphoproteomic and Proteomic Isobaric Labeling Data Using Tandem Mass Spectrum Clustering
por: Hamood, Firas, et al.
Publicado: (2022)

Time-Dependent DNA Origami Denaturation by Guanidinium Chloride, Guanidinium Sulfate, and Guanidinium Thiocyanate
por: Hanke, Marcel, et al.
Publicado: (2022)

Re-assessment of the high-grade serous ovarian cancer phosphoproteome – Identification of kinase candidates in TCGA tumors for future clinical intervention
por: Rolfs, Frank, et al.
Publicado: (2019)

Evaluation and Refinement of Sample Preparation Methods for Extracellular Matrix Proteome Coverage
por: McCabe, Maxwell C., et al.
Publicado: (2021)

Antibody Colocalization Microarray: A Scalable Technology for Multiplex Protein Analysis in Complex Samples
por: Pla-Roca, M., et al.
Publicado: (2012)

AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
por: Willems, Sander, et al.
Publicado: (2021)

Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes
por: Ammar, Constantin, et al.
Publicado: (2023)

Delta-S-Cys-Albumin: A Lab Test that Quantifies Cumulative Exposure of Archived Human Blood Plasma and Serum Samples to Thawed Conditions
por: Jeffs, Joshua W., et al.
Publicado: (2019)

Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples
por: Klaeger, Susan, et al.
Publicado: (2021)

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples
por: Weng, Samuel S. H., et al.
Publicado: (2019)

Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation
por: Batth, Tanveer S., et al.
Publicado: (2019)

Comparative Proteome Signatures of Trace Samples by Multiplexed Data-Independent Acquisition
por: Ctortecka, Claudia, et al.
Publicado: (2021)

MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data
por: Meng, Chen, et al.
Publicado: (2019)

SCASP: A Simple and Robust SDS-Aided Sample Preparation Method for Proteomic Research
por: Gan, Guohong, et al.
Publicado: (2021)

Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF
por: Skowronek, Patricia, et al.
Publicado: (2022)

Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition
por: Skowronek, Patricia, et al.
Publicado: (2022)

Multiple Protein Analysis of Formalin-fixed and Paraffin-embedded Tissue Samples with Reverse phase Protein Arrays
por: Assadi, Maziar, et al.
Publicado: (2013)

Simultaneous Enrichment of Cysteine-containing Peptides and Phosphopeptides Using a Cysteine-specific Phosphonate Adaptable Tag (CysPAT) in Combination with titanium dioxide (TiO(2)) Chromatography
por: Huang, Honggang, et al.
Publicado: (2016)

Tracking the Stability of Clinically Relevant Blood Plasma Proteins with Delta-S-Cys-Albumin—A Dilute-and-Shoot LC/MS-Based Marker of Specimen Exposure to Thawed Conditions
por: Kapuruge, Erandi P., et al.
Publicado: (2022)

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities
por: Pan, Chongle, et al.
Publicado: (2011)

Sensitive and Quantitative Detection of MHC-I Displayed Neoepitopes Using a Semiautomated Workflow and TOMAHAQ Mass Spectrometry
por: Pollock, Samuel B., et al.
Publicado: (2021)

Proteins in Tumor-Derived Plasma Extracellular Vesicles Indicate Tumor Origin
por: Barlin, Meltem, et al.
Publicado: (2022)

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics
por: Fan, Jun, et al.
Publicado: (2015)

Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments
por: Bemis, Kyle D., et al.
Publicado: (2016)

Quantifying Positional Isomers (QPI) by Top-Down Mass Spectrometry
por: Brunner, Andrea M., et al.
Publicado: (2021)

Novel Antibodies for the Simple and Efficient Enrichment of Native O-GlcNAc Modified Peptides
por: Burt, Rajan A., et al.
Publicado: (2021)

Harmonizing Labeling and Analytical Strategies to Obtain Protein Turnover Rates in Intact Adult Animals
por: Hammond, Dean E., et al.
Publicado: (2022)

Sensitive, High-Throughput HLA-I and HLA-II Immunopeptidomics Using Parallel Accumulation-Serial Fragmentation Mass Spectrometry
por: Phulphagar, Kshiti Meera, et al.
Publicado: (2023)

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics([Image: see text])
por: Walzer, Mathias, et al.
Publicado: (2013)

High Throughput Isolation and Glycosylation Analysis of IgG–Variability and Heritability of the IgG Glycome in Three Isolated Human Populations
por: Pučić, Maja, et al.
Publicado: (2011)

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
por: Côté, Richard G., et al.
Publicado: (2012)

Glycomic Characterization of Induced Pluripotent Stem Cells Derived from a Patient Suffering from Phosphomannomutase 2 Congenital Disorder of Glycosylation (PMM2-CDG)
por: Thiesler, Christina T., et al.
Publicado: (2016)

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics
por: Vizcaíno, Juan Antonio, et al.
Publicado: (2017)

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
por: Jones, Andrew R., et al.
Publicado: (2012)

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach
por: Carr, Steven A., et al.
Publicado: (2014)

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
por: Griss, Johannes, et al.
Publicado: (2014)

In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry
por: Rees, Johanna S., et al.
Publicado: (2011)

Inferring Physical Protein Contacts from Large-Scale Purification Data of Protein Complexes
por: Schelhorn, Sven-Eric, et al.
Publicado: (2011)

Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data
por: Griss, Johannes, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_jr1he0hkc1iqf1babikmue0cem