Cargando…

Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets

BACKGROUND: Mass spectrometry-based proteomics can identify and quantify thousands of proteins from individual microbial species, but a significant percentage of these proteins are unannotated and hence classified as proteins of unknown function (PUFs). Due to the difficulty in extracting meaningful...

Descripción completa

Detalles Bibliográficos
Autores principales:	Poudel, Suresh, Cope, Alexander L., O’Dell, Kaela B., Guss, Adam M., Seo, Hyeongmin, Trinh, Cong T., Hettich, Robert L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112048/ https://www.ncbi.nlm.nih.gov/pubmed/33971924 http://dx.doi.org/10.1186/s13068-021-01964-4

Ejemplares similares

Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation
por: Sander, Kyle, et al.
Publicado: (2015)

Genetic engineering of Clostridium thermocellum DSM1313 for enhanced ethanol production
por: Kannuchamy, Saranyah, et al.
Publicado: (2016)

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?
por: Yoav, Shahar, et al.
Publicado: (2017)

Enhanced saccharification of lignocellulosic agricultural biomass and increased bioethanol titre using acclimated Clostridium thermocellum DSM1313
por: Nisha, M., et al.
Publicado: (2017)

CRISPR interference (CRISPRi) as transcriptional repression tool for Hungateiclostridium thermocellum DSM 1313
por: Ganguly, Joyshree, et al.
Publicado: (2019)

Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome
por: Thompson, R. Adam, et al.
Publicado: (2016)

Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
por: Seo, Hyeongmin, et al.
Publicado: (2019)

Elimination of formate production in Clostridium thermocellum
por: Rydzak, Thomas, et al.
Publicado: (2015)

Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum
por: Tian, Liang, et al.
Publicado: (2016)

Coculture with hemicellulose-fermenting microbes reverses inhibition of corn fiber solubilization by Clostridium thermocellum at elevated solids loadings
por: Beri, Dhananjay, et al.
Publicado: (2021)

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism
por: Biswas, Ranjita, et al.
Publicado: (2017)

Dcm methylation is detrimental to plasmid transformation in Clostridium thermocellum
por: Guss, Adam M, et al.
Publicado: (2012)

Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum
por: Verbeke, Tobin J., et al.
Publicado: (2017)

Expression of a heat-stable NADPH-dependent alcohol dehydrogenase from Thermoanaerobacter pseudethanolicus 39E in Clostridium thermocellum 1313 results in increased hydroxymethylfurfural resistance
por: Kim, Sun-Ki, et al.
Publicado: (2017)

Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum
por: Verbeke, Tobin J., et al.
Publicado: (2017)

Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells
por: Dumitrache, Alexandru, et al.
Publicado: (2017)

Enhanced ethanol formation by Clostridium thermocellum via pyruvate decarboxylase
por: Tian, Liang, et al.
Publicado: (2017)

Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass
por: Poudel, Suresh, et al.
Publicado: (2017)

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress
por: Yang, Shihui, et al.
Publicado: (2012)

Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590(T), a Thermophilic Bacterium
por: Hatmaker, E. Anne, et al.
Publicado: (2020)

Increase in Ethanol Yield via Elimination of Lactate Production in an Ethanol-Tolerant Mutant of Clostridium thermocellum
por: Biswas, Ranjita, et al.
Publicado: (2014)

Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics
por: Whitham, Jason M., et al.
Publicado: (2018)

Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities
por: Xu, Qi, et al.
Publicado: (2016)

Tracking the cellulolytic activity of Clostridium thermocellum biofilms
por: Dumitrache, Alexandru, et al.
Publicado: (2013)

Metabolic Adaption of Ethanol-Tolerant Clostridium thermocellum
por: Zhu, Xinshu, et al.
Publicado: (2013)

Identifying promoters for gene expression in Clostridium thermocellum
por: Olson, Daniel G., et al.
Publicado: (2015)

Deciphering Cellodextrin and Glucose Uptake in Clostridium thermocellum
por: Yan, Fei, et al.
Publicado: (2022)

Ethanol tolerance in engineered strains of Clostridium thermocellum
por: Olson, Daniel G., et al.
Publicado: (2023)

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
por: Utturkar, Sagar M., et al.
Publicado: (2016)

Elimination of hydrogenase active site assembly blocks H(2) production and increases ethanol yield in Clostridium thermocellum
por: Biswas, Ranjita, et al.
Publicado: (2015)

Functional heterologous expression of an engineered full length CipA from Clostridium thermocellum in Thermoanaerobacterium saccharolyticum
por: Currie, Devin H, et al.
Publicado: (2013)

Role of Pectinolytic Enzymes Identified in Clostridium thermocellum Cellulosome
por: Chakraborty, Soumyadeep, et al.
Publicado: (2015)

The Roles of Nicotinamide Adenine Dinucleotide Phosphate Reoxidation and Ammonium Assimilation in the Secretion of Amino Acids as Byproducts of Clostridium thermocellum
por: Yayo, Johannes, et al.
Publicado: (2023)

Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction–modification systems
por: Riley, Lauren A., et al.
Publicado: (2019)

Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation
por: Raman, Babu, et al.
Publicado: (2011)

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production
por: Roberts, Seth B, et al.
Publicado: (2010)

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
por: Richter, Hagen, et al.
Publicado: (2012)

Modeling and structural analysis of cellulases using Clostridium thermocellum as template
por: Kumar, Nathan Vinod, et al.
Publicado: (2012)

Expression of adhA from different organisms in Clostridium thermocellum
por: Zheng, Tianyong, et al.
Publicado: (2017)

Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain
por: Yee, Kelsey L, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_gors120fph8d6uch71rodpedsf