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New software tools, databases, and resources in metabolomics: updates from 2020

BACKGROUND: Precision medicine, space exploration, drug discovery to characterization of dark chemical space of habitats and organisms, metabolomics takes a centre stage in providing answers to diverse biological, biomedical, and environmental questions. With technological advances in mass-spectrome...

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Autor principal: Misra, Biswapriya B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112213/
https://www.ncbi.nlm.nih.gov/pubmed/33977389
http://dx.doi.org/10.1007/s11306-021-01796-1
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author Misra, Biswapriya B.
author_facet Misra, Biswapriya B.
author_sort Misra, Biswapriya B.
collection PubMed
description BACKGROUND: Precision medicine, space exploration, drug discovery to characterization of dark chemical space of habitats and organisms, metabolomics takes a centre stage in providing answers to diverse biological, biomedical, and environmental questions. With technological advances in mass-spectrometry and spectroscopy platforms that aid in generation of information rich datasets that are complex big-data, data analytics tend to co-evolve to match the pace of analytical instrumentation. Software tools, resources, databases, and solutions help in harnessing the concealed information in the generated data for eventual translational success. AIM OF THE REVIEW: In this review, ~ 85 metabolomics software resources, packages, tools, databases, and other utilities that appeared in 2020 are introduced to the research community. KEY SCIENTIFIC CONCEPTS OF REVIEW: In Table 1 the computational dependencies and downloadable links of the tools are provided, and the resources are categorized based on their utility. The review aims to keep the community of metabolomics researchers updated with all the resources developed in 2020 at a collated avenue, in line with efforts form 2015 onwards to help them find these at one place for further referencing and use.
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spelling pubmed-81122132021-05-12 New software tools, databases, and resources in metabolomics: updates from 2020 Misra, Biswapriya B. Metabolomics Review Article BACKGROUND: Precision medicine, space exploration, drug discovery to characterization of dark chemical space of habitats and organisms, metabolomics takes a centre stage in providing answers to diverse biological, biomedical, and environmental questions. With technological advances in mass-spectrometry and spectroscopy platforms that aid in generation of information rich datasets that are complex big-data, data analytics tend to co-evolve to match the pace of analytical instrumentation. Software tools, resources, databases, and solutions help in harnessing the concealed information in the generated data for eventual translational success. AIM OF THE REVIEW: In this review, ~ 85 metabolomics software resources, packages, tools, databases, and other utilities that appeared in 2020 are introduced to the research community. KEY SCIENTIFIC CONCEPTS OF REVIEW: In Table 1 the computational dependencies and downloadable links of the tools are provided, and the resources are categorized based on their utility. The review aims to keep the community of metabolomics researchers updated with all the resources developed in 2020 at a collated avenue, in line with efforts form 2015 onwards to help them find these at one place for further referencing and use. Springer US 2021-05-11 2021 /pmc/articles/PMC8112213/ /pubmed/33977389 http://dx.doi.org/10.1007/s11306-021-01796-1 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Review Article
Misra, Biswapriya B.
New software tools, databases, and resources in metabolomics: updates from 2020
title New software tools, databases, and resources in metabolomics: updates from 2020
title_full New software tools, databases, and resources in metabolomics: updates from 2020
title_fullStr New software tools, databases, and resources in metabolomics: updates from 2020
title_full_unstemmed New software tools, databases, and resources in metabolomics: updates from 2020
title_short New software tools, databases, and resources in metabolomics: updates from 2020
title_sort new software tools, databases, and resources in metabolomics: updates from 2020
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112213/
https://www.ncbi.nlm.nih.gov/pubmed/33977389
http://dx.doi.org/10.1007/s11306-021-01796-1
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