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Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites

Biotechnological production requires genetically stable recombinant strains. To ensure genomic stability, recombinant DNA is commonly integrated into the genome of the host strain. Multiple genetic tools have been developed for genomic integration into baker's yeast Saccharomyces cerevisiae. Pr...

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Autores principales: Babaei, Mahsa, Sartori, Luisa, Karpukhin, Alexey, Abashkin, Dmitrii, Matrosova, Elena, Borodina, Irina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112480/
https://www.ncbi.nlm.nih.gov/pubmed/33893795
http://dx.doi.org/10.1093/femsyr/foab027
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author Babaei, Mahsa
Sartori, Luisa
Karpukhin, Alexey
Abashkin, Dmitrii
Matrosova, Elena
Borodina, Irina
author_facet Babaei, Mahsa
Sartori, Luisa
Karpukhin, Alexey
Abashkin, Dmitrii
Matrosova, Elena
Borodina, Irina
author_sort Babaei, Mahsa
collection PubMed
description Biotechnological production requires genetically stable recombinant strains. To ensure genomic stability, recombinant DNA is commonly integrated into the genome of the host strain. Multiple genetic tools have been developed for genomic integration into baker's yeast Saccharomyces cerevisiae. Previously, we had developed a vector toolkit EasyClone-MarkerFree for stable integration into eleven sites on chromosomes X, XI, and XII of S. cerevisiae. The markerless integration was enabled by CRISPR-Cas9 system. In this study, we have expanded the kit with eight additional intergenic integration sites located on different chromosomes. The integration efficiency into the new sites was above 80%. The expression level of green fluorescence protein (gfp) for all eight sites was similar or above XI-2 site from the original EasyClone-MarkerFree toolkit. The cellular growth was not affected by the integration into any of the new eight locations. The eight-vector expansion kit is available from AddGene.
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spelling pubmed-81124802021-05-13 Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites Babaei, Mahsa Sartori, Luisa Karpukhin, Alexey Abashkin, Dmitrii Matrosova, Elena Borodina, Irina FEMS Yeast Res Protocol Biotechnological production requires genetically stable recombinant strains. To ensure genomic stability, recombinant DNA is commonly integrated into the genome of the host strain. Multiple genetic tools have been developed for genomic integration into baker's yeast Saccharomyces cerevisiae. Previously, we had developed a vector toolkit EasyClone-MarkerFree for stable integration into eleven sites on chromosomes X, XI, and XII of S. cerevisiae. The markerless integration was enabled by CRISPR-Cas9 system. In this study, we have expanded the kit with eight additional intergenic integration sites located on different chromosomes. The integration efficiency into the new sites was above 80%. The expression level of green fluorescence protein (gfp) for all eight sites was similar or above XI-2 site from the original EasyClone-MarkerFree toolkit. The cellular growth was not affected by the integration into any of the new eight locations. The eight-vector expansion kit is available from AddGene. Oxford University Press 2021-04-24 /pmc/articles/PMC8112480/ /pubmed/33893795 http://dx.doi.org/10.1093/femsyr/foab027 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of FEMS. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Protocol
Babaei, Mahsa
Sartori, Luisa
Karpukhin, Alexey
Abashkin, Dmitrii
Matrosova, Elena
Borodina, Irina
Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title_full Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title_fullStr Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title_full_unstemmed Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title_short Expansion of EasyClone-MarkerFree toolkit for Saccharomyces cerevisiae genome with new integration sites
title_sort expansion of easyclone-markerfree toolkit for saccharomyces cerevisiae genome with new integration sites
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8112480/
https://www.ncbi.nlm.nih.gov/pubmed/33893795
http://dx.doi.org/10.1093/femsyr/foab027
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