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DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project

PRIMAGE is a European Commission-financed project dealing with medical imaging and artificial intelligence aiming to create an imaging biobank in oncology. The project includes a task dedicated to the interoperability between imaging and standard biobanks. We aim at linking Digital imaging and Commu...

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Autores principales: Scapicchio, Camilla, Gabelloni, Michela, Forte, Sara Maria, Alberich, Leonor Cerdá, Faggioni, Lorenzo, Borgheresi, Rita, Erba, Paola, Paiar, Fabiola, Marti-Bonmati, Luis, Neri, Emanuele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113005/
https://www.ncbi.nlm.nih.gov/pubmed/33977357
http://dx.doi.org/10.1186/s41747-021-00214-4
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author Scapicchio, Camilla
Gabelloni, Michela
Forte, Sara Maria
Alberich, Leonor Cerdá
Faggioni, Lorenzo
Borgheresi, Rita
Erba, Paola
Paiar, Fabiola
Marti-Bonmati, Luis
Neri, Emanuele
author_facet Scapicchio, Camilla
Gabelloni, Michela
Forte, Sara Maria
Alberich, Leonor Cerdá
Faggioni, Lorenzo
Borgheresi, Rita
Erba, Paola
Paiar, Fabiola
Marti-Bonmati, Luis
Neri, Emanuele
author_sort Scapicchio, Camilla
collection PubMed
description PRIMAGE is a European Commission-financed project dealing with medical imaging and artificial intelligence aiming to create an imaging biobank in oncology. The project includes a task dedicated to the interoperability between imaging and standard biobanks. We aim at linking Digital imaging and Communications in Medicine (DICOM) metadata to the Minimum Information About BIobank data Sharing (MIABIS) standard of biobanking. A very first integration model based on the fusion of the two existing standards, MIABIS and DICOM, has been developed. The fundamental method was that of expanding the MIABIS core to the imaging field, adding DICOM metadata derived from CT scans of 18 paediatric patients with neuroblastoma. The model was developed with the relational database management system Structured Query Language. The integration data model has been built as an Entity Relationship Diagram, commonly used to organise data within databases. Five additional entities have been linked to the “Image Collection” subcategory in order to include the imaging metadata more specific to the particular type of data: Body Part Examined, Modality Information, Dataset Type, Image Analysis, and Registration Parameters. The model is a starting point for the expansion of MIABIS with further DICOM metadata, enabling the inclusion of imaging data in biorepositories.
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spelling pubmed-81130052021-05-12 DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project Scapicchio, Camilla Gabelloni, Michela Forte, Sara Maria Alberich, Leonor Cerdá Faggioni, Lorenzo Borgheresi, Rita Erba, Paola Paiar, Fabiola Marti-Bonmati, Luis Neri, Emanuele Eur Radiol Exp Methodology PRIMAGE is a European Commission-financed project dealing with medical imaging and artificial intelligence aiming to create an imaging biobank in oncology. The project includes a task dedicated to the interoperability between imaging and standard biobanks. We aim at linking Digital imaging and Communications in Medicine (DICOM) metadata to the Minimum Information About BIobank data Sharing (MIABIS) standard of biobanking. A very first integration model based on the fusion of the two existing standards, MIABIS and DICOM, has been developed. The fundamental method was that of expanding the MIABIS core to the imaging field, adding DICOM metadata derived from CT scans of 18 paediatric patients with neuroblastoma. The model was developed with the relational database management system Structured Query Language. The integration data model has been built as an Entity Relationship Diagram, commonly used to organise data within databases. Five additional entities have been linked to the “Image Collection” subcategory in order to include the imaging metadata more specific to the particular type of data: Body Part Examined, Modality Information, Dataset Type, Image Analysis, and Registration Parameters. The model is a starting point for the expansion of MIABIS with further DICOM metadata, enabling the inclusion of imaging data in biorepositories. Springer International Publishing 2021-05-12 /pmc/articles/PMC8113005/ /pubmed/33977357 http://dx.doi.org/10.1186/s41747-021-00214-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Methodology
Scapicchio, Camilla
Gabelloni, Michela
Forte, Sara Maria
Alberich, Leonor Cerdá
Faggioni, Lorenzo
Borgheresi, Rita
Erba, Paola
Paiar, Fabiola
Marti-Bonmati, Luis
Neri, Emanuele
DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title_full DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title_fullStr DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title_full_unstemmed DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title_short DICOM-MIABIS integration model for biobanks: a use case of the EU PRIMAGE project
title_sort dicom-miabis integration model for biobanks: a use case of the eu primage project
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113005/
https://www.ncbi.nlm.nih.gov/pubmed/33977357
http://dx.doi.org/10.1186/s41747-021-00214-4
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