Cargando…

Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors

Among non-small cell lung cancer (NSCLC) patients with therapeutically targetable tumor mutations in epidermal growth factor receptor (EGFR), not all patients respond to targeted therapy. Combining circulating-tumor DNA (ctDNA), clinical variables, and radiomic phenotypes may improve prediction of E...

Descripción completa

Detalles Bibliográficos
Autores principales: Yousefi, Bardia, LaRiviere, Michael J., Cohen, Eric A., Buckingham, Thomas H., Yee, Stephanie S., Black, Taylor A., Chien, Austin L., Noël, Peter, Hwang, Wei-Ting, Katz, Sharyn I., Aggarwal, Charu, Thompson, Jeffrey C., Carpenter, Erica L., Kontos, Despina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113313/
https://www.ncbi.nlm.nih.gov/pubmed/33976268
http://dx.doi.org/10.1038/s41598-021-88239-y
_version_ 1783690834731859968
author Yousefi, Bardia
LaRiviere, Michael J.
Cohen, Eric A.
Buckingham, Thomas H.
Yee, Stephanie S.
Black, Taylor A.
Chien, Austin L.
Noël, Peter
Hwang, Wei-Ting
Katz, Sharyn I.
Aggarwal, Charu
Thompson, Jeffrey C.
Carpenter, Erica L.
Kontos, Despina
author_facet Yousefi, Bardia
LaRiviere, Michael J.
Cohen, Eric A.
Buckingham, Thomas H.
Yee, Stephanie S.
Black, Taylor A.
Chien, Austin L.
Noël, Peter
Hwang, Wei-Ting
Katz, Sharyn I.
Aggarwal, Charu
Thompson, Jeffrey C.
Carpenter, Erica L.
Kontos, Despina
author_sort Yousefi, Bardia
collection PubMed
description Among non-small cell lung cancer (NSCLC) patients with therapeutically targetable tumor mutations in epidermal growth factor receptor (EGFR), not all patients respond to targeted therapy. Combining circulating-tumor DNA (ctDNA), clinical variables, and radiomic phenotypes may improve prediction of EGFR-targeted therapy outcomes for NSCLC. This single-center retrospective study included 40 EGFR-mutant advanced NSCLC patients treated with EGFR-targeted therapy. ctDNA data included number of mutations and detection of EGFR T790M. Clinical data included age, smoking status, and ECOG performance status. Baseline chest CT scans were analyzed to extract 429 radiomic features from each primary tumor. Unsupervised hierarchical clustering was used to group tumors into phenotypes. Kaplan–Meier (K–M) curves and Cox proportional hazards regression were modeled for progression-free survival (PFS) and overall survival (OS). Likelihood ratio test (LRT) was used to compare fit between models. Among 40 patients (73% women, median age 62 years), consensus clustering identified two radiomic phenotypes. For PFS, the model combining radiomic phenotypes with ctDNA and clinical variables had c-statistic of 0.77 and a better fit (LRT p = 0.01) than the model with clinical and ctDNA variables alone with a c-statistic of 0.73. For OS, adding radiomic phenotypes resulted in c-statistic of 0.83 versus 0.80 when using clinical and ctDNA variables (LRT p = 0.08). Both models showed separation of K–M curves dichotomized by median prognostic score (p < 0.005). Combining radiomic phenotypes, ctDNA, and clinical variables may enhance precision oncology approaches to managing advanced non-small cell lung cancer with EGFR mutations.
format Online
Article
Text
id pubmed-8113313
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-81133132021-05-12 Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors Yousefi, Bardia LaRiviere, Michael J. Cohen, Eric A. Buckingham, Thomas H. Yee, Stephanie S. Black, Taylor A. Chien, Austin L. Noël, Peter Hwang, Wei-Ting Katz, Sharyn I. Aggarwal, Charu Thompson, Jeffrey C. Carpenter, Erica L. Kontos, Despina Sci Rep Article Among non-small cell lung cancer (NSCLC) patients with therapeutically targetable tumor mutations in epidermal growth factor receptor (EGFR), not all patients respond to targeted therapy. Combining circulating-tumor DNA (ctDNA), clinical variables, and radiomic phenotypes may improve prediction of EGFR-targeted therapy outcomes for NSCLC. This single-center retrospective study included 40 EGFR-mutant advanced NSCLC patients treated with EGFR-targeted therapy. ctDNA data included number of mutations and detection of EGFR T790M. Clinical data included age, smoking status, and ECOG performance status. Baseline chest CT scans were analyzed to extract 429 radiomic features from each primary tumor. Unsupervised hierarchical clustering was used to group tumors into phenotypes. Kaplan–Meier (K–M) curves and Cox proportional hazards regression were modeled for progression-free survival (PFS) and overall survival (OS). Likelihood ratio test (LRT) was used to compare fit between models. Among 40 patients (73% women, median age 62 years), consensus clustering identified two radiomic phenotypes. For PFS, the model combining radiomic phenotypes with ctDNA and clinical variables had c-statistic of 0.77 and a better fit (LRT p = 0.01) than the model with clinical and ctDNA variables alone with a c-statistic of 0.73. For OS, adding radiomic phenotypes resulted in c-statistic of 0.83 versus 0.80 when using clinical and ctDNA variables (LRT p = 0.08). Both models showed separation of K–M curves dichotomized by median prognostic score (p < 0.005). Combining radiomic phenotypes, ctDNA, and clinical variables may enhance precision oncology approaches to managing advanced non-small cell lung cancer with EGFR mutations. Nature Publishing Group UK 2021-05-11 /pmc/articles/PMC8113313/ /pubmed/33976268 http://dx.doi.org/10.1038/s41598-021-88239-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yousefi, Bardia
LaRiviere, Michael J.
Cohen, Eric A.
Buckingham, Thomas H.
Yee, Stephanie S.
Black, Taylor A.
Chien, Austin L.
Noël, Peter
Hwang, Wei-Ting
Katz, Sharyn I.
Aggarwal, Charu
Thompson, Jeffrey C.
Carpenter, Erica L.
Kontos, Despina
Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title_full Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title_fullStr Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title_full_unstemmed Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title_short Combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to EGFR inhibitors
title_sort combining radiomic phenotypes of non-small cell lung cancer with liquid biopsy data may improve prediction of response to egfr inhibitors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113313/
https://www.ncbi.nlm.nih.gov/pubmed/33976268
http://dx.doi.org/10.1038/s41598-021-88239-y
work_keys_str_mv AT yousefibardia combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT larivieremichaelj combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT cohenerica combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT buckinghamthomash combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT yeestephanies combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT blacktaylora combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT chienaustinl combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT noelpeter combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT hwangweiting combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT katzsharyni combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT aggarwalcharu combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT thompsonjeffreyc combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT carpentererical combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors
AT kontosdespina combiningradiomicphenotypesofnonsmallcelllungcancerwithliquidbiopsydatamayimprovepredictionofresponsetoegfrinhibitors