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A minimalistic cyclic ice-binding peptide from phage display

Developing molecules that emulate the properties of naturally occurring ice-binding proteins (IBPs) is a daunting challenge. Rather than relying on the (limited) existing structure–property relationships that have been established for IBPs, here we report the use of phage display for the identificat...

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Autores principales: Stevens, Corey A., Bachtiger, Fabienne, Kong, Xu-Dong, Abriata, Luciano A., Sosso, Gabriele C., Gibson, Matthew I., Klok, Harm-Anton
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113477/
https://www.ncbi.nlm.nih.gov/pubmed/33976148
http://dx.doi.org/10.1038/s41467-021-22883-w
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author Stevens, Corey A.
Bachtiger, Fabienne
Kong, Xu-Dong
Abriata, Luciano A.
Sosso, Gabriele C.
Gibson, Matthew I.
Klok, Harm-Anton
author_facet Stevens, Corey A.
Bachtiger, Fabienne
Kong, Xu-Dong
Abriata, Luciano A.
Sosso, Gabriele C.
Gibson, Matthew I.
Klok, Harm-Anton
author_sort Stevens, Corey A.
collection PubMed
description Developing molecules that emulate the properties of naturally occurring ice-binding proteins (IBPs) is a daunting challenge. Rather than relying on the (limited) existing structure–property relationships that have been established for IBPs, here we report the use of phage display for the identification of short peptide mimics of IBPs. To this end, an ice-affinity selection protocol is developed, which enables the selection of a cyclic ice-binding peptide containing just 14 amino acids. Mutational analysis identifies three residues, Asp8, Thr10 and Thr14, which are found to be essential for ice binding. Molecular dynamics simulations reveal that the side chain of Thr10 hydrophobically binds to ice revealing a potential mechanism. To demonstrate the biotechnological potential of this peptide, it is expressed as a fusion (‘Ice-Tag’) with mCherry and used to purify proteins directly from cell lysate.
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spelling pubmed-81134772021-05-14 A minimalistic cyclic ice-binding peptide from phage display Stevens, Corey A. Bachtiger, Fabienne Kong, Xu-Dong Abriata, Luciano A. Sosso, Gabriele C. Gibson, Matthew I. Klok, Harm-Anton Nat Commun Article Developing molecules that emulate the properties of naturally occurring ice-binding proteins (IBPs) is a daunting challenge. Rather than relying on the (limited) existing structure–property relationships that have been established for IBPs, here we report the use of phage display for the identification of short peptide mimics of IBPs. To this end, an ice-affinity selection protocol is developed, which enables the selection of a cyclic ice-binding peptide containing just 14 amino acids. Mutational analysis identifies three residues, Asp8, Thr10 and Thr14, which are found to be essential for ice binding. Molecular dynamics simulations reveal that the side chain of Thr10 hydrophobically binds to ice revealing a potential mechanism. To demonstrate the biotechnological potential of this peptide, it is expressed as a fusion (‘Ice-Tag’) with mCherry and used to purify proteins directly from cell lysate. Nature Publishing Group UK 2021-05-11 /pmc/articles/PMC8113477/ /pubmed/33976148 http://dx.doi.org/10.1038/s41467-021-22883-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Stevens, Corey A.
Bachtiger, Fabienne
Kong, Xu-Dong
Abriata, Luciano A.
Sosso, Gabriele C.
Gibson, Matthew I.
Klok, Harm-Anton
A minimalistic cyclic ice-binding peptide from phage display
title A minimalistic cyclic ice-binding peptide from phage display
title_full A minimalistic cyclic ice-binding peptide from phage display
title_fullStr A minimalistic cyclic ice-binding peptide from phage display
title_full_unstemmed A minimalistic cyclic ice-binding peptide from phage display
title_short A minimalistic cyclic ice-binding peptide from phage display
title_sort minimalistic cyclic ice-binding peptide from phage display
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8113477/
https://www.ncbi.nlm.nih.gov/pubmed/33976148
http://dx.doi.org/10.1038/s41467-021-22883-w
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