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COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis

OBJECTIVES: The ongoing Coronavirus disease 2019 (COVID-19) pandemic has drastically impacted the global health and economy. Computed tomography (CT) is the prime imaging modality for diagnosis of lung infections in COVID-19 patients. Data-driven and Artificial intelligence (AI)-powered solutions fo...

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Autores principales: Shakouri, Shokouh, Bakhshali, Mohammad Amin, Layegh, Parvaneh, Kiani, Behzad, Masoumi, Farid, Ataei Nakhaei, Saeedeh, Mostafavi, Sayyed Mostafa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8114670/
https://www.ncbi.nlm.nih.gov/pubmed/33980279
http://dx.doi.org/10.1186/s13104-021-05592-x
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author Shakouri, Shokouh
Bakhshali, Mohammad Amin
Layegh, Parvaneh
Kiani, Behzad
Masoumi, Farid
Ataei Nakhaei, Saeedeh
Mostafavi, Sayyed Mostafa
author_facet Shakouri, Shokouh
Bakhshali, Mohammad Amin
Layegh, Parvaneh
Kiani, Behzad
Masoumi, Farid
Ataei Nakhaei, Saeedeh
Mostafavi, Sayyed Mostafa
author_sort Shakouri, Shokouh
collection PubMed
description OBJECTIVES: The ongoing Coronavirus disease 2019 (COVID-19) pandemic has drastically impacted the global health and economy. Computed tomography (CT) is the prime imaging modality for diagnosis of lung infections in COVID-19 patients. Data-driven and Artificial intelligence (AI)-powered solutions for automatic processing of CT images predominantly rely on large-scale, heterogeneous datasets. Owing to privacy and data availability issues, open-access and publicly available COVID-19 CT datasets are difficult to obtain, thus limiting the development of AI-enabled automatic diagnostic solutions. To tackle this problem, large CT image datasets encompassing diverse patterns of lung infections are in high demand. DATA DESCRIPTION: In the present study, we provide an open-source repository containing 1000+ CT images of COVID-19 lung infections established by a team of board-certified radiologists. CT images were acquired from two main general university hospitals in Mashhad, Iran from March 2020 until January 2021. COVID-19 infections were ratified with matching tests including Reverse transcription polymerase chain reaction (RT-PCR) and accompanying clinical symptoms. All data are 16-bit grayscale images composed of 512 × 512 pixels and are stored in DICOM standard. Patient privacy is preserved by removing all patient-specific information from image headers. Subsequently, all images corresponding to each patient are compressed and stored in RAR format.
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spelling pubmed-81146702021-05-12 COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis Shakouri, Shokouh Bakhshali, Mohammad Amin Layegh, Parvaneh Kiani, Behzad Masoumi, Farid Ataei Nakhaei, Saeedeh Mostafavi, Sayyed Mostafa BMC Res Notes Data Note OBJECTIVES: The ongoing Coronavirus disease 2019 (COVID-19) pandemic has drastically impacted the global health and economy. Computed tomography (CT) is the prime imaging modality for diagnosis of lung infections in COVID-19 patients. Data-driven and Artificial intelligence (AI)-powered solutions for automatic processing of CT images predominantly rely on large-scale, heterogeneous datasets. Owing to privacy and data availability issues, open-access and publicly available COVID-19 CT datasets are difficult to obtain, thus limiting the development of AI-enabled automatic diagnostic solutions. To tackle this problem, large CT image datasets encompassing diverse patterns of lung infections are in high demand. DATA DESCRIPTION: In the present study, we provide an open-source repository containing 1000+ CT images of COVID-19 lung infections established by a team of board-certified radiologists. CT images were acquired from two main general university hospitals in Mashhad, Iran from March 2020 until January 2021. COVID-19 infections were ratified with matching tests including Reverse transcription polymerase chain reaction (RT-PCR) and accompanying clinical symptoms. All data are 16-bit grayscale images composed of 512 × 512 pixels and are stored in DICOM standard. Patient privacy is preserved by removing all patient-specific information from image headers. Subsequently, all images corresponding to each patient are compressed and stored in RAR format. BioMed Central 2021-05-12 /pmc/articles/PMC8114670/ /pubmed/33980279 http://dx.doi.org/10.1186/s13104-021-05592-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Shakouri, Shokouh
Bakhshali, Mohammad Amin
Layegh, Parvaneh
Kiani, Behzad
Masoumi, Farid
Ataei Nakhaei, Saeedeh
Mostafavi, Sayyed Mostafa
COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title_full COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title_fullStr COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title_full_unstemmed COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title_short COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis
title_sort covid19-ct-dataset: an open-access chest ct image repository of 1000+ patients with confirmed covid-19 diagnosis
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8114670/
https://www.ncbi.nlm.nih.gov/pubmed/33980279
http://dx.doi.org/10.1186/s13104-021-05592-x
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