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Distributed in-memory data management for workflow executions
Complex scientific experiments from various domains are typically modeled as workflows and executed on large-scale machines using a Parallel Workflow Management System (WMS). Since such executions usually last for hours or days, some WMSs provide user steering support, i.e., they allow users to run...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8114816/ https://www.ncbi.nlm.nih.gov/pubmed/34013039 http://dx.doi.org/10.7717/peerj-cs.527 |
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author | Souza, Renan Silva, Vitor Lima, Alexandre A. B. de Oliveira, Daniel Valduriez, Patrick Mattoso, Marta |
author_facet | Souza, Renan Silva, Vitor Lima, Alexandre A. B. de Oliveira, Daniel Valduriez, Patrick Mattoso, Marta |
author_sort | Souza, Renan |
collection | PubMed |
description | Complex scientific experiments from various domains are typically modeled as workflows and executed on large-scale machines using a Parallel Workflow Management System (WMS). Since such executions usually last for hours or days, some WMSs provide user steering support, i.e., they allow users to run data analyses and, depending on the results, adapt the workflows at runtime. A challenge in the parallel execution control design is to manage workflow data for efficient executions while enabling user steering support. Data access for high scalability is typically transaction-oriented, while for data analysis, it is online analytical-oriented so that managing such hybrid workloads makes the challenge even harder. In this work, we present SchalaDB, an architecture with a set of design principles and techniques based on distributed in-memory data management for efficient workflow execution control and user steering. We propose a distributed data design for scalable workflow task scheduling and high availability driven by a parallel and distributed in-memory DBMS. To evaluate our proposal, we develop d-Chiron, a WMS designed according to SchalaDB’s principles. We carry out an extensive experimental evaluation on an HPC cluster with up to 960 computing cores. Among other analyses, we show that even when running data analyses for user steering, SchalaDB’s overhead is negligible for workloads composed of hundreds of concurrent tasks on shared data. Our results encourage workflow engine developers to follow a parallel and distributed data-oriented approach not only for scheduling and monitoring but also for user steering. |
format | Online Article Text |
id | pubmed-8114816 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81148162021-05-18 Distributed in-memory data management for workflow executions Souza, Renan Silva, Vitor Lima, Alexandre A. B. de Oliveira, Daniel Valduriez, Patrick Mattoso, Marta PeerJ Comput Sci Databases Complex scientific experiments from various domains are typically modeled as workflows and executed on large-scale machines using a Parallel Workflow Management System (WMS). Since such executions usually last for hours or days, some WMSs provide user steering support, i.e., they allow users to run data analyses and, depending on the results, adapt the workflows at runtime. A challenge in the parallel execution control design is to manage workflow data for efficient executions while enabling user steering support. Data access for high scalability is typically transaction-oriented, while for data analysis, it is online analytical-oriented so that managing such hybrid workloads makes the challenge even harder. In this work, we present SchalaDB, an architecture with a set of design principles and techniques based on distributed in-memory data management for efficient workflow execution control and user steering. We propose a distributed data design for scalable workflow task scheduling and high availability driven by a parallel and distributed in-memory DBMS. To evaluate our proposal, we develop d-Chiron, a WMS designed according to SchalaDB’s principles. We carry out an extensive experimental evaluation on an HPC cluster with up to 960 computing cores. Among other analyses, we show that even when running data analyses for user steering, SchalaDB’s overhead is negligible for workloads composed of hundreds of concurrent tasks on shared data. Our results encourage workflow engine developers to follow a parallel and distributed data-oriented approach not only for scheduling and monitoring but also for user steering. PeerJ Inc. 2021-05-07 /pmc/articles/PMC8114816/ /pubmed/34013039 http://dx.doi.org/10.7717/peerj-cs.527 Text en © 2021 Souza et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. |
spellingShingle | Databases Souza, Renan Silva, Vitor Lima, Alexandre A. B. de Oliveira, Daniel Valduriez, Patrick Mattoso, Marta Distributed in-memory data management for workflow executions |
title | Distributed in-memory data management for workflow executions |
title_full | Distributed in-memory data management for workflow executions |
title_fullStr | Distributed in-memory data management for workflow executions |
title_full_unstemmed | Distributed in-memory data management for workflow executions |
title_short | Distributed in-memory data management for workflow executions |
title_sort | distributed in-memory data management for workflow executions |
topic | Databases |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8114816/ https://www.ncbi.nlm.nih.gov/pubmed/34013039 http://dx.doi.org/10.7717/peerj-cs.527 |
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