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Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network

The exclusive presence of β-D-ribofuranose in nucleic acids is still a conundrum in prebiotic chemistry, given that pyranose species are substantially more stable at equilibrium. However, a precise characterisation of the relative furanose/pyranose fraction at temperatures higher than about 50 °C is...

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Autores principales: Dass, Avinash Vicholous, Georgelin, Thomas, Westall, Frances, Foucher, Frédéric, De Los Rios, Paolo, Busiello, Daniel Maria, Liang, Shiling, Piazza, Francesco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8115175/
https://www.ncbi.nlm.nih.gov/pubmed/33980850
http://dx.doi.org/10.1038/s41467-021-22818-5
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author Dass, Avinash Vicholous
Georgelin, Thomas
Westall, Frances
Foucher, Frédéric
De Los Rios, Paolo
Busiello, Daniel Maria
Liang, Shiling
Piazza, Francesco
author_facet Dass, Avinash Vicholous
Georgelin, Thomas
Westall, Frances
Foucher, Frédéric
De Los Rios, Paolo
Busiello, Daniel Maria
Liang, Shiling
Piazza, Francesco
author_sort Dass, Avinash Vicholous
collection PubMed
description The exclusive presence of β-D-ribofuranose in nucleic acids is still a conundrum in prebiotic chemistry, given that pyranose species are substantially more stable at equilibrium. However, a precise characterisation of the relative furanose/pyranose fraction at temperatures higher than about 50 °C is still lacking. Here, we employ a combination of NMR measurements and statistical mechanics modelling to predict a population inversion between furanose and pyranose at equilibrium at high temperatures. More importantly, we show that a steady temperature gradient may steer an open isomerisation network into a non-equilibrium steady state where furanose is boosted beyond the limits set by equilibrium thermodynamics. Moreover, we demonstrate that nonequilibrium selection of furanose is maximum at optimal dissipation, as gauged by the temperature gradient and energy barriers for isomerisation. The predicted optimum is compatible with temperature drops found in hydrothermal vents associated with extremely fresh lava flows on the seafloor.
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spelling pubmed-81151752021-05-14 Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network Dass, Avinash Vicholous Georgelin, Thomas Westall, Frances Foucher, Frédéric De Los Rios, Paolo Busiello, Daniel Maria Liang, Shiling Piazza, Francesco Nat Commun Article The exclusive presence of β-D-ribofuranose in nucleic acids is still a conundrum in prebiotic chemistry, given that pyranose species are substantially more stable at equilibrium. However, a precise characterisation of the relative furanose/pyranose fraction at temperatures higher than about 50 °C is still lacking. Here, we employ a combination of NMR measurements and statistical mechanics modelling to predict a population inversion between furanose and pyranose at equilibrium at high temperatures. More importantly, we show that a steady temperature gradient may steer an open isomerisation network into a non-equilibrium steady state where furanose is boosted beyond the limits set by equilibrium thermodynamics. Moreover, we demonstrate that nonequilibrium selection of furanose is maximum at optimal dissipation, as gauged by the temperature gradient and energy barriers for isomerisation. The predicted optimum is compatible with temperature drops found in hydrothermal vents associated with extremely fresh lava flows on the seafloor. Nature Publishing Group UK 2021-05-12 /pmc/articles/PMC8115175/ /pubmed/33980850 http://dx.doi.org/10.1038/s41467-021-22818-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dass, Avinash Vicholous
Georgelin, Thomas
Westall, Frances
Foucher, Frédéric
De Los Rios, Paolo
Busiello, Daniel Maria
Liang, Shiling
Piazza, Francesco
Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title_full Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title_fullStr Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title_full_unstemmed Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title_short Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
title_sort equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8115175/
https://www.ncbi.nlm.nih.gov/pubmed/33980850
http://dx.doi.org/10.1038/s41467-021-22818-5
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