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Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough

A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of de...

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Detalles Bibliográficos
Autores principales: Ceballos, Ruben Michael, Stacy, Carson Len
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8116781/
https://www.ncbi.nlm.nih.gov/pubmed/33151141
http://dx.doi.org/10.1099/jgv.0.001515
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author Ceballos, Ruben Michael
Stacy, Carson Len
author_facet Ceballos, Ruben Michael
Stacy, Carson Len
author_sort Ceballos, Ruben Michael
collection PubMed
description A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of detriment to host due to viral infection. Quantifying V (R) using canonical parameters, like maximum specific growth rate (μ (max)), can fail to provide reliable information regarding virulence. Although area-under-the-curve (AUC) calculations are more robust, they are sensitive to limit selection. Using empirical data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that has proven to be more robust than existing methods for assessing V (R). This metric (I (SC)) accurately aligns biological phenomena with quantified metrics to determine V (R). It also addresses a gap in virology by permitting comparisons between different non-lytic virus infections or non-lytic versus lytic virus infections on a given host in single-virus/single-host infections.
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spelling pubmed-81167812021-05-13 Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough Ceballos, Ruben Michael Stacy, Carson Len J Gen Virol Short Communication A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of detriment to host due to viral infection. Quantifying V (R) using canonical parameters, like maximum specific growth rate (μ (max)), can fail to provide reliable information regarding virulence. Although area-under-the-curve (AUC) calculations are more robust, they are sensitive to limit selection. Using empirical data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that has proven to be more robust than existing methods for assessing V (R). This metric (I (SC)) accurately aligns biological phenomena with quantified metrics to determine V (R). It also addresses a gap in virology by permitting comparisons between different non-lytic virus infections or non-lytic versus lytic virus infections on a given host in single-virus/single-host infections. Microbiology Society 2020-11-05 /pmc/articles/PMC8116781/ /pubmed/33151141 http://dx.doi.org/10.1099/jgv.0.001515 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License.
spellingShingle Short Communication
Ceballos, Ruben Michael
Stacy, Carson Len
Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title_full Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title_fullStr Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title_full_unstemmed Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title_short Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
title_sort quantifying relative virulence: when μ (max) fails and auc alone just is not enough
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8116781/
https://www.ncbi.nlm.nih.gov/pubmed/33151141
http://dx.doi.org/10.1099/jgv.0.001515
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