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Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough
A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of de...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8116781/ https://www.ncbi.nlm.nih.gov/pubmed/33151141 http://dx.doi.org/10.1099/jgv.0.001515 |
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author | Ceballos, Ruben Michael Stacy, Carson Len |
author_facet | Ceballos, Ruben Michael Stacy, Carson Len |
author_sort | Ceballos, Ruben Michael |
collection | PubMed |
description | A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of detriment to host due to viral infection. Quantifying V (R) using canonical parameters, like maximum specific growth rate (μ (max)), can fail to provide reliable information regarding virulence. Although area-under-the-curve (AUC) calculations are more robust, they are sensitive to limit selection. Using empirical data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that has proven to be more robust than existing methods for assessing V (R). This metric (I (SC)) accurately aligns biological phenomena with quantified metrics to determine V (R). It also addresses a gap in virology by permitting comparisons between different non-lytic virus infections or non-lytic versus lytic virus infections on a given host in single-virus/single-host infections. |
format | Online Article Text |
id | pubmed-8116781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-81167812021-05-13 Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough Ceballos, Ruben Michael Stacy, Carson Len J Gen Virol Short Communication A challenge in virology is quantifying relative virulence (V (R)) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of detriment to host due to viral infection. Quantifying V (R) using canonical parameters, like maximum specific growth rate (μ (max)), can fail to provide reliable information regarding virulence. Although area-under-the-curve (AUC) calculations are more robust, they are sensitive to limit selection. Using empirical data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that has proven to be more robust than existing methods for assessing V (R). This metric (I (SC)) accurately aligns biological phenomena with quantified metrics to determine V (R). It also addresses a gap in virology by permitting comparisons between different non-lytic virus infections or non-lytic versus lytic virus infections on a given host in single-virus/single-host infections. Microbiology Society 2020-11-05 /pmc/articles/PMC8116781/ /pubmed/33151141 http://dx.doi.org/10.1099/jgv.0.001515 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Short Communication Ceballos, Ruben Michael Stacy, Carson Len Quantifying relative virulence: when μ (max) fails and AUC alone just is not enough |
title | Quantifying relative virulence: when μ
(max) fails and AUC alone just is not enough |
title_full | Quantifying relative virulence: when μ
(max) fails and AUC alone just is not enough |
title_fullStr | Quantifying relative virulence: when μ
(max) fails and AUC alone just is not enough |
title_full_unstemmed | Quantifying relative virulence: when μ
(max) fails and AUC alone just is not enough |
title_short | Quantifying relative virulence: when μ
(max) fails and AUC alone just is not enough |
title_sort | quantifying relative virulence: when μ
(max) fails and auc alone just is not enough |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8116781/ https://www.ncbi.nlm.nih.gov/pubmed/33151141 http://dx.doi.org/10.1099/jgv.0.001515 |
work_keys_str_mv | AT ceballosrubenmichael quantifyingrelativevirulencewhenmmaxfailsandaucalonejustisnotenough AT stacycarsonlen quantifyingrelativevirulencewhenmmaxfailsandaucalonejustisnotenough |