Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis

The complete mitogenome sequence of Micromys erythrotis was determined using long PCR. The genome was 16,238 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the he...

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Autores principales: Cai, He, Wang, Qing-Qing, Zhao, Xin-Xu, Yao, Qian-Qian, Wu, Ning, Zhang, Jun-Sheng, Liu, Zhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8118456/
https://www.ncbi.nlm.nih.gov/pubmed/34027072
http://dx.doi.org/10.1080/23802359.2021.1926353
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author Cai, He
Wang, Qing-Qing
Zhao, Xin-Xu
Yao, Qian-Qian
Wu, Ning
Zhang, Jun-Sheng
Liu, Zhu
author_facet Cai, He
Wang, Qing-Qing
Zhao, Xin-Xu
Yao, Qian-Qian
Wu, Ning
Zhang, Jun-Sheng
Liu, Zhu
author_sort Cai, He
collection PubMed
description The complete mitogenome sequence of Micromys erythrotis was determined using long PCR. The genome was 16,238 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.7%), C (24.8%), T (29.1%) and G (12.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Micromys erythrotis in Muridae at the molecular level. The mitochondrial genome would be a significant supplement for the Micromys erythrotis genetic background.
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spelling pubmed-81184562021-05-21 Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis Cai, He Wang, Qing-Qing Zhao, Xin-Xu Yao, Qian-Qian Wu, Ning Zhang, Jun-Sheng Liu, Zhu Mitochondrial DNA B Resour Mitogenome Announcement The complete mitogenome sequence of Micromys erythrotis was determined using long PCR. The genome was 16,238 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.7%), C (24.8%), T (29.1%) and G (12.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Micromys erythrotis in Muridae at the molecular level. The mitochondrial genome would be a significant supplement for the Micromys erythrotis genetic background. Taylor & Francis 2021-05-12 /pmc/articles/PMC8118456/ /pubmed/34027072 http://dx.doi.org/10.1080/23802359.2021.1926353 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cai, He
Wang, Qing-Qing
Zhao, Xin-Xu
Yao, Qian-Qian
Wu, Ning
Zhang, Jun-Sheng
Liu, Zhu
Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title_full Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title_fullStr Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title_full_unstemmed Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title_short Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis
title_sort sequencing and analysis of the complete mitochondrial genome of micromys erythrotis from china and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8118456/
https://www.ncbi.nlm.nih.gov/pubmed/34027072
http://dx.doi.org/10.1080/23802359.2021.1926353
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