Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L

Juncus effusus L., a perennial herbaceous species of family Juncaceae, is distributed mainly in warm areas worldwide. We studied the complete chloroplast (cp) genome of J. effusus through next-generation sequencing technology. The whole cp genome contained 170,612 base pairs, with the GC ratio as 35...

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Autores principales: Lu, Mengya, Fang, Zhizheng, Sheng, Feihan, Tong, Xiaohui, Han, Rongchun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8118462/
https://www.ncbi.nlm.nih.gov/pubmed/34027070
http://dx.doi.org/10.1080/23802359.2021.1926357
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author Lu, Mengya
Fang, Zhizheng
Sheng, Feihan
Tong, Xiaohui
Han, Rongchun
author_facet Lu, Mengya
Fang, Zhizheng
Sheng, Feihan
Tong, Xiaohui
Han, Rongchun
author_sort Lu, Mengya
collection PubMed
description Juncus effusus L., a perennial herbaceous species of family Juncaceae, is distributed mainly in warm areas worldwide. We studied the complete chloroplast (cp) genome of J. effusus through next-generation sequencing technology. The whole cp genome contained 170,612 base pairs, with the GC ratio as 35.99%. The 70 genes annotated from the cp genome include 32 protein coding genes, eight rRNA genes and 30 tRNA genes. The genome’s large single-copy region (LSC) was 80,640 bp, with the small single-copy region (SSC) 64,718 bp, and inverted repeat (IR) 12,627 bp. Furthermore, a phylogenetic tree was generated to evaluate evolutionary relationship between J. effusus and relevant species. This study will be beneficial for the further understanding and application of J. effusus.
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spelling pubmed-81184622021-05-21 Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L Lu, Mengya Fang, Zhizheng Sheng, Feihan Tong, Xiaohui Han, Rongchun Mitochondrial DNA B Resour Mitogenome Announcement Juncus effusus L., a perennial herbaceous species of family Juncaceae, is distributed mainly in warm areas worldwide. We studied the complete chloroplast (cp) genome of J. effusus through next-generation sequencing technology. The whole cp genome contained 170,612 base pairs, with the GC ratio as 35.99%. The 70 genes annotated from the cp genome include 32 protein coding genes, eight rRNA genes and 30 tRNA genes. The genome’s large single-copy region (LSC) was 80,640 bp, with the small single-copy region (SSC) 64,718 bp, and inverted repeat (IR) 12,627 bp. Furthermore, a phylogenetic tree was generated to evaluate evolutionary relationship between J. effusus and relevant species. This study will be beneficial for the further understanding and application of J. effusus. Taylor & Francis 2021-05-10 /pmc/articles/PMC8118462/ /pubmed/34027070 http://dx.doi.org/10.1080/23802359.2021.1926357 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lu, Mengya
Fang, Zhizheng
Sheng, Feihan
Tong, Xiaohui
Han, Rongchun
Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title_full Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title_short Characterization and phylogenetic analysis of the complete chloroplast genome of Juncus effusus L
title_sort characterization and phylogenetic analysis of the complete chloroplast genome of juncus effusus l
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8118462/
https://www.ncbi.nlm.nih.gov/pubmed/34027070
http://dx.doi.org/10.1080/23802359.2021.1926357
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