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A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis

Deep learning has shown tremendous potential in the task of object detection in images. However, a common challenge with this task is when only a limited number of images containing the object of interest are available. This is a particular issue in cancer screening, such as digital breast tomosynth...

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Autores principales: Swiecicki, Albert, Konz, Nicholas, Buda, Mateusz, Mazurowski, Maciej A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119417/
https://www.ncbi.nlm.nih.gov/pubmed/33986361
http://dx.doi.org/10.1038/s41598-021-89626-1
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author Swiecicki, Albert
Konz, Nicholas
Buda, Mateusz
Mazurowski, Maciej A.
author_facet Swiecicki, Albert
Konz, Nicholas
Buda, Mateusz
Mazurowski, Maciej A.
author_sort Swiecicki, Albert
collection PubMed
description Deep learning has shown tremendous potential in the task of object detection in images. However, a common challenge with this task is when only a limited number of images containing the object of interest are available. This is a particular issue in cancer screening, such as digital breast tomosynthesis (DBT), where less than 1% of cases contain cancer. In this study, we propose a method to train an inpainting generative adversarial network to be used for cancer detection using only images that do not contain cancer. During inference, we removed a part of the image and used the network to complete the removed part. A significant error in completing an image part was considered an indication that such location is unexpected and thus abnormal. A large dataset of DBT images used in this study was collected at Duke University. It consisted of 19,230 reconstructed volumes from 4348 patients. Cancerous masses and architectural distortions were marked with bounding boxes by radiologists. Our experiments showed that the locations containing cancer were associated with a notably higher completion error than the non-cancer locations (mean error ratio of 2.77). All data used in this study has been made publicly available by the authors.
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spelling pubmed-81194172021-05-14 A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis Swiecicki, Albert Konz, Nicholas Buda, Mateusz Mazurowski, Maciej A. Sci Rep Article Deep learning has shown tremendous potential in the task of object detection in images. However, a common challenge with this task is when only a limited number of images containing the object of interest are available. This is a particular issue in cancer screening, such as digital breast tomosynthesis (DBT), where less than 1% of cases contain cancer. In this study, we propose a method to train an inpainting generative adversarial network to be used for cancer detection using only images that do not contain cancer. During inference, we removed a part of the image and used the network to complete the removed part. A significant error in completing an image part was considered an indication that such location is unexpected and thus abnormal. A large dataset of DBT images used in this study was collected at Duke University. It consisted of 19,230 reconstructed volumes from 4348 patients. Cancerous masses and architectural distortions were marked with bounding boxes by radiologists. Our experiments showed that the locations containing cancer were associated with a notably higher completion error than the non-cancer locations (mean error ratio of 2.77). All data used in this study has been made publicly available by the authors. Nature Publishing Group UK 2021-05-13 /pmc/articles/PMC8119417/ /pubmed/33986361 http://dx.doi.org/10.1038/s41598-021-89626-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Swiecicki, Albert
Konz, Nicholas
Buda, Mateusz
Mazurowski, Maciej A.
A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title_full A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title_fullStr A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title_full_unstemmed A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title_short A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
title_sort generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119417/
https://www.ncbi.nlm.nih.gov/pubmed/33986361
http://dx.doi.org/10.1038/s41598-021-89626-1
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