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Validation of reference genes for use in untreated bovine fibroblasts

Proper normalization of RT-qPCR data is pivotal to the interpretation of results and accuracy of scientific conclusions. Though different approaches may be taken, normalization against multiple reference genes is now standard practice. Genes traditionally used and deemed constitutively expressed hav...

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Autores principales: Toorani, T., Mackie, P. M., Mastromonaco, G. F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119449/
https://www.ncbi.nlm.nih.gov/pubmed/33986374
http://dx.doi.org/10.1038/s41598-021-89657-8
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author Toorani, T.
Mackie, P. M.
Mastromonaco, G. F.
author_facet Toorani, T.
Mackie, P. M.
Mastromonaco, G. F.
author_sort Toorani, T.
collection PubMed
description Proper normalization of RT-qPCR data is pivotal to the interpretation of results and accuracy of scientific conclusions. Though different approaches may be taken, normalization against multiple reference genes is now standard practice. Genes traditionally used and deemed constitutively expressed have demonstrated variability in expression under different experimental conditions, necessitating the proper validation of reference genes prior to utilization. Considering the wide use of fibroblasts in research and scientific applications, it is imperative that suitable reference genes for fibroblasts of different animal origins and conditions be elucidated. Previous studies on bovine fibroblasts have tested limited genes and/or samples. Herein, we present an extensive study investigating the expression stability of 16 candidate reference genes across 7 untreated bovine fibroblast cell lines subjected to controlled conditions. Data were analysed using various statistical tools and algorithms, including geNorm, NormFinder, BestKeeper, and RefFinder. A combined use of GUSB and RPL13A was determined to be the best approach for data normalization in untreated bovine fibroblasts.
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spelling pubmed-81194492021-05-14 Validation of reference genes for use in untreated bovine fibroblasts Toorani, T. Mackie, P. M. Mastromonaco, G. F. Sci Rep Article Proper normalization of RT-qPCR data is pivotal to the interpretation of results and accuracy of scientific conclusions. Though different approaches may be taken, normalization against multiple reference genes is now standard practice. Genes traditionally used and deemed constitutively expressed have demonstrated variability in expression under different experimental conditions, necessitating the proper validation of reference genes prior to utilization. Considering the wide use of fibroblasts in research and scientific applications, it is imperative that suitable reference genes for fibroblasts of different animal origins and conditions be elucidated. Previous studies on bovine fibroblasts have tested limited genes and/or samples. Herein, we present an extensive study investigating the expression stability of 16 candidate reference genes across 7 untreated bovine fibroblast cell lines subjected to controlled conditions. Data were analysed using various statistical tools and algorithms, including geNorm, NormFinder, BestKeeper, and RefFinder. A combined use of GUSB and RPL13A was determined to be the best approach for data normalization in untreated bovine fibroblasts. Nature Publishing Group UK 2021-05-13 /pmc/articles/PMC8119449/ /pubmed/33986374 http://dx.doi.org/10.1038/s41598-021-89657-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Toorani, T.
Mackie, P. M.
Mastromonaco, G. F.
Validation of reference genes for use in untreated bovine fibroblasts
title Validation of reference genes for use in untreated bovine fibroblasts
title_full Validation of reference genes for use in untreated bovine fibroblasts
title_fullStr Validation of reference genes for use in untreated bovine fibroblasts
title_full_unstemmed Validation of reference genes for use in untreated bovine fibroblasts
title_short Validation of reference genes for use in untreated bovine fibroblasts
title_sort validation of reference genes for use in untreated bovine fibroblasts
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8119449/
https://www.ncbi.nlm.nih.gov/pubmed/33986374
http://dx.doi.org/10.1038/s41598-021-89657-8
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